Sequanix: a dynamic graphical interface for Snakemake workflows

authors

  • Desvillechabrol Dimitri
  • Legendre Rachel
  • Rioualen Claire
  • Bouchier Christiane
  • Van Helden Jacques
  • Kennedy Sean
  • Cokelaer Thomas

document type

ART

abstract

We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users.

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