Publications 2023
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- Lamia Madaci, Charlyne Gard, Sébastien Nin, Alexandre Sarrabay, Céline Baier, et al.. Single-Cell Transcriptome Analysis of Acute Myeloid Leukemia Cells Using Methanol Fixation and Cryopreservation. Diseases, 2023, 12 (1), pp.1. ⟨10.3390/diseases12010001⟩. ⟨hal-04501292⟩ Document type : ART
- Ashwin Sunderraj, Luisa Marin Cunha, Matheus Avila, Shaina Alexandria, Ariela Mota Ferreira, et al.. Parasite DNA and Markers of Decreased Immune Activation Associate Prospectively with Cardiac Functional Decline over 10 Years among Trypanosoma cruzi Seropositive Individuals in Brazil. International Journal of Molecular Sciences, 2023, 25 (1), pp.44. ⟨10.3390/ijms25010044⟩. ⟨hal-04438614⟩ Document type : ART
- Pauline Andrieux. Identification et caractérisations fonctionnelles de variants génétiques rares associés aux cardiopathies.. Sciences du Vivant [q-bio]. Aix-Marseille Université, 2023. Français. ⟨NNT : 0000AIXM0000⟩. ⟨tel-04408896⟩ Type de document : THESE
- Pauline Brochet. Étude du processus pathogénique associé à la maladie de Chagas à l'aide d'analyses multi-omiques. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2023. Français. ⟨NNT : 2023AIXM0000⟩. ⟨tel-04408927⟩ Type de document : THESE
- Jean-Philippe Mévy, B. Coulomb, Nathalie Dupuy, Isabelle Bombarda, Jean-Claude Raynal, et al.. La toxicité des éléments traces métalliques chez le chêne pubescent dans le bassin minier de Gardanne. Séminaire 2023 de l’OHM BMP et Transition énergétique en région Sud-PACA, Nov 2023, Meyreuil, France. ⟨hal-04624624⟩ Type de document : COMM
- João Paulo Silva Nunes, Vinicius Moraes de Paiva Roda, Pauline Andrieux, Jorge Kalil, Christophe Chevillard, et al.. Inflammation and mitochondria in the pathogenesis of chronic Chagas disease cardiomyopathy. Experimental Biology and Medicine, 2023, 248 (22), pp.2062-2071. ⟨10.1177/15353702231220658⟩. ⟨hal-04438579⟩ Document type : ART
- Mathieu Adjemout, Bruno Pouvelle, Fatou Thiam, Alassane Thiam, Magali Torres, et al.. Concurrent PIEZO1 activation and ATP2B4 blockade effectively reduce the risk of cerebral malaria and inhibit in vitro Plasmodium falciparum multiplication in red blood cells. Genes & Diseases, 2023, 10 (6), pp.2210-2214. ⟨10.1016/j.gendis.2023.02.029⟩. ⟨hal-04179608⟩ Document type : ART
- Jules Cretin, Mathieu Adjemout, Christelle Dieppois, Frederic Gallardo, Magali Torres, et al.. A Non-Coding Fc Gamma Receptor Cis-Regulatory Variant within the 1q23 Gene Cluster Is Associated with Plasmodium falciparum Infection in Children Residing in Burkina Faso. International Journal of Molecular Sciences, 2023, 24 (21), pp.15711. ⟨10.3390/ijms242115711⟩. ⟨hal-04268017⟩ Document type : ART
- Salvatore Spicuglia, Alvaro Rada-Iglesias. Understanding enhancer function to understand human disease. BioEssays, 2023, 45, ⟨10.1002/bies.202300149⟩. ⟨hal-04288514v1⟩ Document type : ART
- Kaj Chokeshaiusaha, Thanida Sananmuang, Denis Puthier, Catherine N'Guyen. Cross-species analysis of differential transcript usage in humans and chickens with fatty liver disease. Veterinary World, 2023, 16 (9), pp.1964-1973. ⟨10.14202/vetworld.2023.1964-1973⟩. ⟨hal-04289438v2⟩ Document type : ART
- Domenico Iuso, Isabel Garcia-Saez, Yohann Couté, Yoshiki Yamaryo-Botté, Elisabetta Boeri Erba, et al.. Nucleoside diphosphate kinases 1 and 2 regulate a protective liver response to a high-fat diet. Science Advances , 2023, 9 (36), pp.eadh0140. ⟨10.1126/sciadv.adh0140⟩. ⟨hal-04216158⟩ Document type : ART
- Pierre de Langen, Fayrouz Hammal, Elise Guéret, Jean-Christophe Mouren, Lionel Spinelli, et al.. Characterizing intergenic transcription at RNA polymerase II binding sites in normal and cancer tissues. Cell Genomics, 2023, 3, pp.100411. ⟨10.1016/j.xgen.2023.100411⟩. ⟨hal-04228229⟩ Document type : ART
- Cyril Esnault, Talha Magat, Amal Zine El Aabidine, Encar Garcia-Oliver, Anne Cucchiarini, et al.. G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nature Genetics, 2023, 55 (8), pp.1359-1369. ⟨10.1038/s41588-023-01437-4⟩. ⟨hal-04285615⟩ Document type : ART
- Cynthia Arroyo Portilla, Romain Fenouil, Camille Wagner, Cécilia Luciani, Margaux Lagier, et al.. Peyer’s patch phagocytes acquire specific transcriptional programs that influence their maturation and activation profiles. Mucosal Immunology, 2023, 16 (4), pp.527-547. ⟨10.1016/j.mucimm.2023.05.009⟩. ⟨hal-04239631⟩ Document type : ART
- Lucien Courtois, Aurélie Cabannes-Hamy, Rathana Kim, Marine Delecourt, Antoine Pinton, et al.. IL-7 receptor expression is frequent in T-cell acute lymphoblastic leukemia and predicts sensitivity to JAK inhibition. Blood, 2023, 142 (2), pp.158-171. ⟨10.1182/blood.2022017948⟩. ⟨hal-04191646⟩ Document type : ART
- Lamia Madaci, Charlyne Gard, Sébastien Nin, Geoffroy Venton, Pascal Rihet, et al.. The Contribution of Multiplexing Single Cell RNA Sequencing in Acute Myeloid Leukemia. Diseases, 2023, 11 (3), pp.96. ⟨10.3390/diseases11030096⟩. ⟨hal-04161267⟩ Document type : ART
- Lamia Madaci, Laure Farnault, Norman Abbou, Jean Gabert, Geoffroy Venton, et al.. Impact of Next-Generation Sequencing in Diagnosis, Prognosis and Therapeutic Management of Acute Myeloid Leukemia/Myelodysplastic Neoplasms. Cancers, 2023, 15 (13), pp.3280. ⟨10.3390/cancers15133280⟩. ⟨hal-04138937⟩ Document type : ART
- Alban Gaignard, Thomas Rosnet, Frédéric de Lamotte, Vincent Lefort, Marie-Dominique Devignes. FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards. Journal of Biomedical Semantics, 2023, 14 (1), pp.7. ⟨10.1186/s13326-023-00289-5⟩. ⟨hal-04148181⟩ Document type : ART
- Saadat Hussain, Nori Sadouni, Dominic van Essen, Lan T M Dao, Quentin Ferré, et al.. Short tandem repeats are important contributors to silencer elements in T cells. Nucleic Acids Research, 2023, 51 (10), pp.4845-4866. ⟨10.1093/nar/gkad187⟩. ⟨hal-04044391⟩ Document type : ART
- Juliette Malfait, Jing Wan, Salvatore Spicuglia. Epromoters are new players in the regulatory landscape with potential pleiotropic roles. BioEssays, 2023, ⟨10.1002/bies.202300012⟩. ⟨hal-04200857⟩ Document type : ART
- Fayrouz Hammal. Étude des éléments cis-régulateurs à différentes échelles. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2023. Français. ⟨NNT : 2023AIXM0163⟩. ⟨tel-04411834⟩ Type de document : THESE
- Caroline Choquet, Pierre Sicard, Juliette Vahdat, Thi Hong Minh Nguyen, Frank Kober, et al.. Nkx2-5 Loss of Function in the His-Purkinje System Hampers Its Maturation and Leads to Mechanical Dysfunction. Journal of Cardiovascular Development and Disease, 2023, 10 (5), pp.194. ⟨10.3390/jcdd10050194⟩. ⟨hal-04092079⟩ Document type : ART
- Mourdas Mohamed, François Sabot, Marion Varoqui, Bruno Mugat, Katell Audouin, et al.. TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches. Genome Biology, 2023, 24 (1), pp.63. ⟨10.1186/s13059-023-02911-2⟩. ⟨hal-04291760⟩ Document type : ART
- Sophie Combaluzier, Julie Quessada, Norman Abbou, Robin Arcani, Antoine Tichadou, et al.. Cytological Diagnosis of Classic Myeloproliferative Neoplasms at the Age of Molecular Biology. Cells, 2023, 12 (6), pp.946. ⟨10.3390/cells12060946⟩. ⟨hal-04236711⟩ Document type : ART
- Alassane Thiam, Samia Nisar, Mathieu Adjemout, Frederic Gallardo, Oumar Ka, et al.. ATP2B4 regulatory genetic variants are associated with mild malaria. Malaria Journal, 2023, 22 (68), ⟨10.1186/s12936-023-04503-8⟩. ⟨hal-04006760⟩ Document type : ART
- Aitor González, Vincent Dubut, Emmanuel Corse, Reda Mekdad, Thomas Dechatre, et al.. VTAM: A robust pipeline for validating metabarcoding data using controls. Computational and Structural Biotechnology Journal, 2023, 21, pp.1151 - 1156. ⟨10.1016/j.csbj.2023.01.034⟩. ⟨hal-03978642⟩ Document type : ART
- Charlotte Smith, Ashish Goyal, Dieter Weichenhan, Eric Allemand, Anand Mayakonda, et al.. TAL1 activation in T-cell acute lymphoblastic leukemia: a novel oncogenic 3’ neo-enhancer. Haematologica, 2023, 108, pp.1259 - 1271. ⟨10.3324/haematol.2022.281583⟩. ⟨hal-04289494⟩ Document type : ART
- Pauline Brochet, Jean-Christophe Mouren, Laurent Hannouche, Fabrice Lopez, Benoit Ballester, et al.. ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database. Database - The journal of Biological Databases and Curation, 2023, 2023, pp.baad037. ⟨10.1093/database/baad037⟩. ⟨hal-04284853⟩ Document type : ART
- Norman Abbou, Pauline Piazzola, Jean Gabert, Vincent Ernest, Robin Arcani, et al.. Impact of Molecular Biology in Diagnosis, Prognosis, and Therapeutic Management of BCR::ABL1-Negative Myeloproliferative Neoplasm. Cells, 2023, 12 (1), pp.105. ⟨10.3390/cells12010105⟩. ⟨hal-03935016⟩ Document type : ART
- Dae-Kyum Kim, Benjamin Weller, Chung-Wen Lin, Dayag Sheykhkarimli, Jennifer Knapp, et al.. A proteome-scale map of the SARS-CoV-2–human contactome. Nature Biotechnology, 2023, 41 (1), pp.140-149. ⟨10.1038/s41587-022-01475-z⟩. ⟨hal-03832174⟩ Document type : ART
- Moussa Ndiaye, Gora Diop, Celine Derbois, Jean-Louis Spadoni, Josselin Noirel, et al.. Gene expression profiling of peripheral blood mononuclear cells from women with cervical lesions reveals new markers of cancer. Oncology Reports, 2023, 49 (6), pp.118. ⟨10.3892/or.2023.8555⟩. ⟨cea-04334211⟩ Document type : ART
- Cyril Esnault, Talha Magat, Amal Zine El Aabidine, Encar Garcia-Oliver, Anne Cucchiarini, et al.. G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nature Genetics, 2023, 55, pp.1359-1369. ⟨hal-04793061⟩ Document type : ART
- José Antonio Marin-Neto, Anis Rassi, Gláucia Maria Moraes Oliveira, Luís Claudio Lemos Correia, Alberto Novaes Ramos, et al.. SBC Guideline on the Diagnosis and Treatment of Patients with Cardiomyopathy of Chagas Disease – 2023. Arquivos Brasileiros de Cardiologia, 2023, 120, ⟨10.36660/abc.20230269⟩. ⟨hal-04289028⟩ Document type : ART
- Estelle Balducci, Thomas Steimlé, Charlotte Smith, Patrick Villarese, Mélanie Feroul, et al.. TREC mediated oncogenesis in human immature T lymphoid malignancies preferentially involves ZFP36L2. Molecular Cancer, 2023, 22 (1), pp.108. ⟨10.1186/s12943-023-01794-y⟩. ⟨hal-04237392⟩ Document type : ART
- Sébastien A Choteau, Marceau Cristianini, Kevin Maldonado, Lilian Drets, Mégane Boujeant, et al.. mimicINT: a workflow for microbe-host protein interaction inference. 2023. ⟨hal-04240079⟩ Document type : UNDEFINED
