Scientific and administrative responsabilities
International Relations Contact Person & Student Mobility Academic Advisor (Department of Biology, AMU)
TAGC Contact Person for the French Bioinformatics Institute (IFB, ELIXIR-FR)
Research Interests
My research activity aims at understanding the molecular basis of human disease by using and developing network-based approaches.
In particular, I seek to elucidate the potential role of bacteria and viruses in modulating human health.
I am also interested in: genetic variation impact on cell networks, multifunctional proteins, regulatory sites and signal transduction.
Teaching
University affiliation: Department of Biology, Faculty of Sciences, Aix-Marseille University.
Teaching Bioinformatics and Networks at the Bachelor level (B), and Computational Biology, Systems and Network Biology, Biostatistics and Programming (Python and R) at the Master level (M) in different programs: Biochemistry (B), Bioinformatics (M), Cellular Biology (B), Genomics and Data Analysis (M), Immunology (M).
Staff and student supervision
Current:
- Lou Bergogne (PhD Student, Aix-Marseille University, with Christine Brun) [2024 --]
- Jaime Fernandez-MacGregor (PhD Student, CENTURI, with Christine Brun and Renaud Vincentelli) [2021 -- ]
- Thomas Stosskopf (IE, Bioinformatics Engineer, Inserm, with Christine Brun) [2024 --]
Previous:
- Mathilde Slivak (Master Student. Genomics, with Christine Brun) [2024]
- Lou Bergogne (Master Student, Bioinformatics) [2023, 2024]
- Mégane Boujeant (IE, Bioinformatics Engineer, Inserm, with Anais Baudot and Christine Brun) [2022-2023]
- Deeya Saha (postdoctoral fellow, Inserm, with Christine Brun) [2021-2023]
- Sébastien Choteau (PhD student, CENTURI, thesis directors: Christine Brun, Philippe Pierre) [2019-2022]
- Mégane Boujeant (Master Student, Bioinformatics) [2021, 2022]
- Kevin Maldonado (Technical Diploma and Bachelor in Computer Science, with Lionel Spinelli) [2022, 2023]
- Maroua Chahdil (Master Student, Bioinformatics, with Christine Brun) [2021]
- Lilian Drets (Technical Diploma in Computer Science, with Lionel Spinelli) [2021]
- Marceau Cristianini (Master Student, Bioinformatics) [2020]
- Loréna Quatreville (Master Student, Genomics) [2020]
- Alexis Prod'homme (Master Student, Cell Biology, with Christine Brun) [2019]
- Elisa Micarelli (Visiting PhD student) [2016]
- Diogo Ribeiro(PhD student, thesis directors: Christine Brun, Gian Gaetano Tartaglia) [2015-2016]
- Shérazade Braham (Master BBSG)[2014]
Collaborations
Current collaborations:
- Luana Licata (University of Tor Vergata, Rome, Italy)
- Pascal Falter-Braun (Helhmotz Zentrum, Munich, Germany)
- Béatrice Nal-Rogier (CIML, Marseille, France)
- Allegra Via (University of La Sapienza, Rome, Italy)
- Renaud Vincentelli (AFMB, Marseille, France)
Past collaborators: Patrick Aloy (Insitute for Research in Biomedicine, Barcelona, Spain), Ugo Borello (Department of Biology, University of Pisa, Italy), Tiago Cordeiro (ITQB, Nova University, Lisbon, Portugal), David Biron and Dr. Hicham El Alaoui (CNRS UMR6023, Université Blaise Pascal), Manuela Helmer-Citterich (University of Tor Vergata, Rome, Italy), Dorothée Missé (CNRS, MIGIVEC-IRD, Montpellier, France), Thomas Rattei (Department of Microbiology, University of Vienna, Austria), Ulrich Stelzl (University of Graz, Austria).
Funding
Modeling host interaction network perturbations by bacterial proteins (HintBact project, A*Midex Pépinière d’excellence, 2022-2024, coordinator)
Charting the host-pathogen interactomes between Coronaviruses and the human host (RiPCoN project, H2020, 2020-2023, participant)
Host-microbe protein interactions and chronic diseases (DIME project, EU JPI HDHL-INTIMIC, 2018-2021, participant)
The role of protein-RNA interactions in cell networks (A*Midex Mediterranean network, 2015-2016, participant)
External references
|
https://orcid.org/0000-0002-4818-6161 |
Below are listed my publications at the TAGC. Full list on my Google Scholar Profile.