Clust&See, a Cytoscape plugin for large network clustering
Large networks, such as protein-protein interaction networks, are extremely difficult to analyze as a whole. We developed Clust&See, a Cytoscape plug-in dedicated to the identification, visualization and analysis of clusters extracted from such networks.
(i) the use of three different, recently developed graph clustering algorithms
(ii) the ability to visualize a partition as a quotient graph
(iii) tools for investigating the relationships between vertices and clusters as well as their organization within the whole graph.Clust&See is available on Cytoscape 2.8.
To install the plugin, click on the download link below and save ClustnSee.jar in the Cytoscape plugins folder or use the Cytoscape App Store.