Publications 2012

R. Fenouil, P. Cauchy, F. Koch, N. Descostes, J. Z. Cabeza, et al.. CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters. Genome Research, Cold Spring Harbor Laboratory Press, 2012, 22 (12), pp.2399--2408. ⟨10.1101/gr.138776.112⟩. ⟨hal-01614960⟩ Document type : ART
G. A. Passos, E. T. Sakamoto-Hojo, F. S. Manoel-Caetano, D. J. Xavier, A. F. Evangelista, et al.. Gene expression profiles displayed by peripheral blood mononuclear cells from patients with type 2 diabetes mellitus focusing on biological processes implicated on the pathogenesis of the disease. Gene, Elsevier, 2012, 511 (2), pp.151--160. ⟨10.1016/j.gene.2012.09.090⟩. ⟨hal-01595817⟩ Document type : ART
Alessandro Furlan, Fabienne Lamballe, Venturina Stagni, Azeemudeen Hussain, Sylvie Richelme, et al.. Met acts through Abl to regulate p53 transcriptional outcomes and cell survival in the developing liver.. Journal of Hepatology, Elsevier, 2012, 57 (6), pp.1292-8. ⟨10.1016/j.jhep.2012.07.044⟩. ⟨hal-00843385⟩ Document type : ART
S. Le Noir, R. Ben Abdelali, M. Lelorch, J. Bergeron, S. Sungalee, et al.. Extensive molecular mapping of TCR / - and TCR -involved chromosomal translocations reveals distinct mechanisms of oncogene activation in T-ALL. Blood, American Society of Hematology, 2012, 120 (16), pp.3298--3309. ⟨10.1182/blood-2012-04-425488⟩. ⟨hal-01614958⟩ Document type : ART
D. Seyres, Laurence Röder, Laurent Perrin. Genes and networks regulating cardiac development and function in flies: genetic and functional genomic approaches. BRIEFINGS IN FUNCTIONAL GENOMICS, 2012, 11 (5), pp.366--374. ⟨10.1093/bfgp/els028⟩. ⟨hal-01619087⟩ Document type : ART
Jean-Philippe Parvy, Laura Napal, Thomas Rubin, Mickael Poidevin, Laurent Perrin, et al.. Drosophila melanogaster Acetyl-CoA-Carboxylase Sustains a Fatty Acid–Dependent Remote Signal to Waterproof the Respiratory System. PLoS Genetics, Public Library of Science, 2012, 8 (8), pp.e1002925. ⟨10.1371/journal.pgen.1002925⟩. ⟨hal-02135709⟩ Document type : ART
Nathalie Boone, Aurélie Bergon, Béatrice Loriod, Arnaud Devèze, Catherine Nguyen, et al.. Genome-wide analysis of familial dysautonomia and kinetin target genes with patient olfactory ecto-mesenchymal stem cells.. Human Mutation, Wiley, 2012, 33 (3), pp.530-40. ⟨10.1002/humu.22010⟩. ⟨hal-00701177⟩ Document type : ART
Salvatore Spicuglia, Laurent Vanhille. Chromatin signatures of active enhancers. Nucleus, 2012, 3 (2), pp.126--131. ⟨10.4161/nucl.19232⟩. ⟨hal-01614959⟩ Document type : ART
Albin Fontaine, Stéphanie Bourdon, Maya Belghazi, Mathieu Pophillat, Patrick Fourquet, et al.. Plasmodium falciparum infection-induced changes in erythrocyte membrane proteins.. Parasitology Research, Springer Verlag (Germany), 2012, 110 (2), pp.545-56. ⟨10.1007/s00436-011-2521-2⟩. ⟨pasteur-00835709⟩ Document type : ART
Cyrille Lepoivre, Aurélie Bergon, Fabrice Lopez, Narayanan Perumal, Catherine Nguyen, et al.. TranscriptomeBrowser 3.0 : introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks.. BMC Bioinformatics, BioMed Central, 2012, 13 (1), pp.19. ⟨10.1186/1471-2105-13-19⟩. ⟨inserm-00676438⟩ Document type : ART
Denise Lemaire, Theoliz Barbosa, Pascal Rihet. Coping with genetic diversity: the contribution of pathogen and human genomics to modern vaccinology. Brazilian Journal of Medical and Biological Research, Associação Brasileira de Divulgação Científica, 2012, 45 (5), pp.376-385. ⟨10.1590/S0100-879X2011007500142⟩. ⟨hal-01455691⟩ Document type : ART
Morgane Thomas-Chollier, Elodie Darbo, Carl Herrmann, Matthieu Defrance, Denis Thieffry, et al.. A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nature Protocols, Nature Publishing Group, 2012, 7 (8), pp.1551--1568. ⟨hal-01624286⟩ Document type : ART
Emmanuelle Becker, Benoît Robisson, Charles E Chapple, Alain Guénoche, Christine Brun. Multifunctional proteins revealed by overlapping clustering in protein interaction network.. Bioinformatics, Oxford University Press (OUP), 2012, 28 (1), pp.84-90. ⟨10.1093/bioinformatics/btr621⟩. ⟨hal-00877694⟩ Document type : ART
Raoul Belzeaux, Aurélie Bergon, Valérie Jeanjean, Béatrice Loriod, Christine Formisano-Tréziny, et al.. Responder and nonresponder patients exhibit different peripheral transcriptional signatures during major depressive episode. Translational Psychiatry, Nature Pub. Group, 2012, 2, pp.e185. ⟨10.1038/tp.2012.112⟩. ⟨hal-01575056⟩ Document type : ART
Ryoichiro Kageyama, Yasutaka Niwa, Akihiro Isomura, Aitor Gonzalez, Yukiko Harima. Oscillatory gene expression and somitogenesis. Wiley Interdisciplinary Reviews: Developmental Biology, Wiley, 2012, pp.n/a. ⟨hal-01595778⟩ Document type : ART
Siok-Lay Tan, Toshiyuki Ohtsuka, Aitor Gonzalez, Ryoichiro Kageyama. MicroRNA9 regulates neural stem cell differentiation by controlling Hes1 expression dynamics in the developing brain. Genes to Cells, Wiley, 2012, 17 (12), pp.952-961. ⟨hal-01595779⟩ Document type : ART
Jonathan Gaucher, Fayçal Boussouar, Emilie Montellier, Sandrine Curtet, Thierry Buchou, et al.. Bromodomain-dependent stage-specific male genome programming by Brdt: Brdt: a master regulator of spermatogenesis. EMBO Journal, EMBO Press, 2012, 31 (19), pp.3809 - 3820. ⟨10.1038/emboj.2012.233⟩. ⟨hal-03388049⟩ Document type : ART
Anaïs Baudot, Ouissem Souiai, C. Brun. Network analysis and protein function prediction with the PRODISTIN Web site. Methods in Molecular Biology, Humana Press/Springer Imprint, 2012, 804, pp.313-26. ⟨hal-01596219⟩ Document type : ART
Morgane Thomas-Chollier, Carl Herrmann, Matthieu Defrance, Olivier Sand, Denis Thieffry, et al.. RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Research, Oxford University Press, 2012, 40 (4). ⟨hal-01624284⟩ Document type : ART
Emmanuelle Bouveret, Christine Brun. Bacterial interactomes: from interactions to networks.. Methods in Molecular Biology, Humana Press/Springer Imprint, 2012, 804, pp.15--33. ⟨10.1007/978-1-61779-361-5_2⟩. ⟨hal-01458252⟩ Document type : ART
Jacques Helden, Ariane Toussaint, Denis Thieffry. Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling. Methods in Molecular Biology, Humana Press/Springer Imprint, 2012, 804, pp.1--11. ⟨hal-01624285⟩ Document type : ART
Alexandre Atkinson, Séverine Garnier, Sarwat Afridi, Francis Fumoux, Pascal Rihet. Genetic variations in genes involved in heparan sulphate biosynthesis are associated with Plasmodium falciparum parasitaemia: a familial study in Burkina Faso.. Malaria Journal, BioMed Central, 2012, 11 (1), pp.108. ⟨10.1186/1475-2875-11-108⟩. ⟨inserm-00703058⟩ Document type : ART
Karoline Faust, Jacques Helden. Predicting metabolic pathways by sub-network extraction. Methods in Molecular Biology, Humana Press/Springer Imprint, 2012, 804, pp.107--30. ⟨hal-01624283⟩ Document type : ART
Albin Fontaine, Thierry Fusaï, Sébastien Briolant, Sylvain Buffet, Claude Villard, et al.. Anopheles salivary gland proteomes from major malaria vectors. BMC Genomics, BioMed Central, 2012, 13 (1), pp.614. ⟨10.1186/1471-2164-13-614⟩. ⟨inserm-00772652⟩ Document type : ART
Sarwat Afridi, Alexandre Atkinson, Séverine Garnier, Francis Fumoux, Pascal Rihet. Malaria resistance genes are associated with the levels of IgG subclasses directed against Plasmodium falciparum blood-stage antigens in Burkina Faso.. Malaria Journal, BioMed Central, 2012, 11 (1), pp.308. ⟨10.1186/1475-2875-11-308⟩. ⟨inserm-00780329⟩ Document type : ART
Sophie de Bentzmann, Caroline Giraud, Christophe Bernard, Virginie Calderon, Friederike Ewald, et al.. Unique biofilm signature, drug susceptibility and decreased virulence in Drosophila through the Pseudomonas aeruginosa two-component system PprAB.. PLoS Pathogens, Public Library of Science, 2012, 8 (11), pp.e1003052. ⟨10.1371/journal.ppat.1003052⟩. ⟨inserm-00905018⟩ Document type : ART
V. Monnier, M. Iche-Torres, M. Rera, V. Contremoulins, C. Guichard, et al.. dJun and Vri/dNFIL3 Are Major Regulators of Cardiac Aging in Drosophila. PLoS Genetics, Public Library of Science, 2012, 8 (11), pp.e1003081. ⟨10.1371/journal.pgen.1003081⟩. ⟨hal-01619066⟩ Document type : ART
Jean-Philippe Parvy, Laura Napal, Thomas Rubin, Mickael Poidevin, Laurent Perrin, et al.. Drosophila melanogaster Acetyl-CoA-Carboxylase Sustains a Fatty Acid–Dependent Remote Signal to Waterproof the Respiratory System. PLoS Genetics, Public Library of Science, 2012, 8 (8), pp.e1002925. ⟨10.1371/journal.pgen.1002925⟩. ⟨hal-01619088⟩ Document type : ART