Publications 2015

Gilles Didier, Christine Brun, Anaïs Baudot. Identifying communities from multiplex biological networks. . PeerJ, PeerJ, 2015, 3:e1525, 〈10.7717/peerj.1525〉. 〈hal-01255282〉 Document type : ART
Véréna Landel, Pascal Millet, Kévin Baranger, Béatrice Loriod, François Féron. Vitamin D interacts with Esr1 and Igf1 to regulate molecular pathways relevant to Alzheimer’s disease. Molecular Neurodegeneration, BioMed Central, 2015, 11 (1), pp.22. 〈10.1186/s13024-016-0087-2〉. 〈inserm-01322519〉 Document type : ART
Caroline Besson, Remi Lancar, Sophie Prevot, Pauline Brice, Marie-Caroline Meyohas, et al.. High Risk Features Contrast With Favorable Outcomes in HIV-associated Hodgkin Lymphoma in the Modern cART Era, ANRS CO16 LYMPHOVIR Cohort.. Clinical Infectious Diseases, Oxford University Press (OUP), 2015, 61 (9), pp.1469-75. 〈10.1093/cid/civ627〉. 〈hal-01543677〉 Document type : ART
Coralie Hoareau-Aveilla, Thibaud Valentin, Camille Daugrois, Cathy Quelen, Géraldine Mitou, et al.. Reversal of microRNA-150 silencing disadvantages crizotinib-resistant NPM-ALK(+) cell growth. Journal of Clinical Investigation, American Society for Clinical Investigation, 2015, 125 (9), pp.3505--3518. 〈10.1172/JCI78488〉. 〈hal-01614947〉 Document type : ART
Charles E Chapple, Christine Brun. Redefining protein moonlighting.. Oncotarget, Impact journals, 2015, 6 (19), pp.16812-3. 〈10.18632/oncotarget.4793〉. 〈hal-01407805〉 Document type : ART
Alejandra Medina-Rivera, Matthieu Defrance, Olivier Sand, Carl Herrmann, Jaime A. Castro-Mondragon, et al.. RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Research, Oxford University Press, 2015, 43 (W1), pp.W50--W56. 〈10.1093/nar/gkv362〉. 〈hal-01624369〉 Document type : ART
Chérif Chetouhi, Johan Panek, Ludovic Bonhomme, Hicham Elalaoui, Catherine Texier, et al.. Cross-talk in host–parasite associations: What do past and recent proteomics approaches tell us?. Infection, Genetics and Evolution, Elsevier, 2015, 33, pp.84 - 94. 〈10.1016/j.meegid.2015.04.015〉. 〈hal-01406325〉 Document type : ART
Andreas Zanzoni, Charles E. Chapple, Christine Brun. Relationships between predicted moonlighting proteins, human diseases, and comorbidities from a network perspective. Frontiers in Physiology, Frontiers, 2015, 〈10.3389/fphys.2015.00171〉. 〈hal-01202109〉 Document type : ART
Charles E Chapple, Benoît Robisson, Lionel Spinelli, Celine Guien, Becker Emmanuelle, et al.. Extreme multifunctional proteins identified from a human protein interaction network.. Nature Communications, Nature Publishing Group, 2015, 6 (1), pp.7412. 〈10.1038/ncomms8412〉. 〈hal-01407399〉 Document type : ART
Charles E Chapple, Carl Herrmann, Christine Brun. PrOnto database : GO term functional dissimilarity inferred from biological data.. Frontiers in Genetics, Frontiers, 2015, 6, pp.200. 〈10.3389/fgene.2015.00200〉. 〈hal-01408050〉 Document type : ART
Catherine Metzler-Guillemain, Genevieve Victorero, Cyrille Lepoivre, Aurélie Bergon, Miriam Yammine, et al.. Sperm mRNAs and microRNAs as candidate markers for the impact of toxicants on human spermatogenesis: an application to tobacco smoking. Systems Biology in Reproductive Medicine, 2015, 61 (3), pp.139--149. 〈10.3109/19396368.2015.1022835〉. 〈hal-01445195〉 Document type : ART
G Tiberi, A Pekowska, C Oudin, A Ivey, A Autret, et al.. PcG methylation of the HIST1 cluster defines an epigenetic marker of acute myeloid leukemia. Leukemia, 2015, 29 (5), pp.1202--1206. 〈10.1038/leu.2014.339〉. 〈hal-01614949〉 Document type : ART
Manon Baëza, Séverine Viala, Marjorie Heim, Amélie Dard, Bruno Hudry, et al.. Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo. eLife, eLife Sciences Publication, 2015, 4 (UNSP e06034), 〈10.7554/eLife.06034〉. 〈hal-01215867〉 Document type : ART
Allegra Via, Andreas Zanzoni. A prismatic view of protein phosphorylation in health and disease. Frontiers in Genetics, Frontiers, 2015, 〈10.3389/fgene.2015.00131〉. 〈hal-01406317〉 Document type : ART
Joaquin Zacarias-Cabeza, Mohamed Belhocine, Laurent Vanhille, Pierre Cauchy, Frederic Koch, et al.. Transcription-Dependent Generation of a Specialized Chromatin Structure at the TCRβ Locus. The Journal of Immunology, 2015, 194 (7), pp.3432--3443. 〈10.4049/jimmunol.1400789〉. 〈hal-01614946〉 Document type : ART
Laurent Vanhille, Aurélien Griffon, Muhammad Ahmad Maqbool, Joaquin Zacarias-Cabeza, Lan T.M. Dao, et al.. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Nature Communications, Nature Publishing Group, 2015, 6, pp.6905. 〈10.1038/ncomms7905〉. 〈hal-01614948〉 Document type : ART
Lydie Pradel, Laurent Vanhille, Salvatore Spicuglia. Projet européen \textitBlueprint: Vers une caractérisation épigénomique du système immunitaire. Médecine/Sciences, 2015, 31 (3), pp.236--238. 〈10.1051/medsci/20153103003〉. 〈hal-01612098〉 Document type : ART
Aurélien Griffon, Quentin Barbier, Jordi Dalino, Jacques Van Helden, Salvatore Spicuglia, et al.. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape. Nucleic Acids Research, Oxford University Press, 2015, 43 (e27), 〈10.1093/nar/gku1280〉. 〈hal-01219379〉 Document type : ART
Allegra Via, Bora Uyar, Christine Brun, Andreas Zanzoni. How pathogens use linear motifs to perturb host cell networks. Trends in Biochemical Sciences, Elsevier, 2015, 〈10.1016/j.tibs.2014.11.001〉. 〈hal-01405781〉 Document type : ART
Caroline Pical-Izard, Roberto Crocchiolo, Samuel Granjeaud, Eloise Kochbati, Sylvaine Just-Landi, et al.. Reconstitution of Natural Killer Cells in HLA-Matched HSCT after Reduced-Intensity Conditioning: Impact on Clinical Outcome. Biology of Blood and Marrow Transplantation, Elsevier, 2015, 21 (3), pp.429-439. 〈10.1016/j.bbmt.2014.11.681〉. 〈hal-01108575〉 Document type : ART
Angelo Facchiano, Claudia Angelini, Roberta Bosotti, Alessandro Guffanti, Anna Marabotti, et al.. Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics. BMC Bioinformatics, BioMed Central, 2015, 16 (Suppl 9), 〈10.1186/1471-2105-16-S9-S1〉. 〈hal-01406365〉 Document type : ART
Carole Sanchez, Céline Baier, Julien G. Colle, Rabie Chelbi, Pascal Rihet, et al.. Natural killer cells in patients with polycythemia vera. Human Immunology, Elsevier, 2015, 76 (9), pp.644-650. 〈10.1016/j.humimm.2015.09.010〉. 〈hal-01595901〉 Document type : ART
Audrey Bouchet, Nathalie Sakakini, Michèle El Atifi, Céline Le Clec'H, Elke Braeuer-Krisch, et al.. Identification of AREG and PLK1 pathway modulation as a potential key of the response of intracranial 9L tumor to microbeam radiation therapy. International Journal of Cancer, Wiley, 2015, 136 (11), pp.2705-2716. 〈10.1002/ijc.29318〉. 〈hal-01595900〉 Document type : ART
Samuel Rommelaere, Virginie Millet, Pascal Rihet, Scott Atwell, Emmanuèle Helfer, et al.. Serum Pantetheinase/Vanin Levels Regulate Erythrocyte Homeostasis and Severity of Malaria. American Journal of Pathology, American Society for Investigative Pathology, 2015, 185 (11), pp.3039-3052. 〈10.1016/j.ajpath.2015.07.011〉. 〈hal-01595898〉 Document type : ART
A. Brisebarre, B. Kumulungui, S. Sawadogo, S. Afridi, F. Fumoux, et al.. Genome-wide significant linkage to IgG subclass responses against Plasmodium falciparum antigens on chromosomes 8p22-p21, 9q34 and 20q13. Genes and Immunity, Nature Publishing Group: Open Access Hybrid Model Option B, 2015, 16 (3), pp.187-192. 〈10.1038/gene.2014.66〉. 〈hal-01595902〉 Document type : ART
Aurélie Bergon, Raoul Belzeaux, Magali Comte, Florence Pelletier, Mylène Hervé, et al.. CX3CR1 is dysregulated in blood and brain from schizophrenia patients. Schizophrenia Research, Elsevier, 2015, 168 (1-2), pp.434-443. 〈10.1016/j.schres.2015.08.010〉. 〈hal-01575079〉 Document type : ART
Y. Labiad, C. Mercier, I. Vadim, L. Farnault, J. Colle, et al.. Inflammation and sepsis as part of hematopoietic stem cell transplantation: a transcriptomic approach. Bone Marrow Transplantation, Nature Publishing Group, 2015, 50, pp.S418. 〈hal-01595899〉 Document type : ART
Anne Geiger, Bernadette Tchicaya, Pascal Rihet. Technical data of the transcriptomic analysis performed on tsetse fly symbionts, Sodalis glossinidius and Wigglesworthia glossinidia, harbored, respectively by non-infected, Trypanosoma brucei gambiense infected and self-cured Glossina palpalis gambiensis tsetse flies. Genomics Data, Elsevier, 2015, 4, pp.133-136. 〈10.1016/j.gdata.2015.04.007〉. 〈hal-01595897〉 Document type : ART
C. Cayrou, B Ballester, I Peiffer, R Fenouil, P. Coulombe, et al.. The chromatin environment shapes DNA replication origin organization and defines origin classes. Genome Research, Cold Spring Harbor Laboratory Press, 2015, 25 (12), pp.1873-1885. 〈10.1101/gr.192799.115〉. 〈hal-01240797〉 Document type : ART