Publications 2015

Gilles Didier, Christine Brun, Anaïs Baudot. Identifying communities from multiplex biological networks. . PeerJ, PeerJ, 2015, 3:e1525, ⟨10.7717/peerj.1525⟩. ⟨hal-01255282⟩ Document type : ART
Véréna Landel, Pascal Millet, Kévin Baranger, Béatrice Loriod, François Féron. Vitamin D interacts with Esr1 and Igf1 to regulate molecular pathways relevant to Alzheimer’s disease. Molecular Neurodegeneration, BioMed Central, 2015, 11 (1), pp.22. ⟨10.1186/s13024-016-0087-2⟩. ⟨inserm-01322519⟩ Document type : ART
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, et al.. The chromatin environment shapes DNA replication origin organization and defines origin classes. Genome Research, Cold Spring Harbor Laboratory Press, 2015, 25 (12), pp.1873-1885. ⟨10.1101/gr.192799.115⟩. ⟨hal-02154106⟩ Document type : ART
Caroline Besson, Remi Lancar, Sophie Prevot, Pauline Brice, Marie-Caroline Meyohas, et al.. High Risk Features Contrast With Favorable Outcomes in HIV-associated Hodgkin Lymphoma in the Modern cART Era, ANRS CO16 LYMPHOVIR Cohort.. Clinical Infectious Diseases, Oxford University Press (OUP), 2015, 61 (9), pp.1469-75. ⟨10.1093/cid/civ627⟩. ⟨hal-01543677⟩ Document type : ART
Coralie Hoareau-Aveilla, Thibaud Valentin, Camille Daugrois, Cathy Quelen, Géraldine Mitou, et al.. Reversal of microRNA-150 silencing disadvantages crizotinib-resistant NPM-ALK(+) cell growth. Journal of Clinical Investigation, American Society for Clinical Investigation, 2015, 125 (9), pp.3505--3518. ⟨10.1172/JCI78488⟩. ⟨hal-01614947⟩ Document type : ART
Charles E Chapple, Christine Brun. Redefining protein moonlighting.. Oncotarget, Impact journals, 2015, 6 (19), pp.16812-3. ⟨10.18632/oncotarget.4793⟩. ⟨hal-01407805⟩ Document type : ART
Chérif Chetouhi, Johan Panek, Ludovic Bonhomme, Hicham Elalaoui, Catherine Texier, et al.. Cross-talk in host–parasite associations: What do past and recent proteomics approaches tell us?. Infection, Genetics and Evolution, Elsevier, 2015, 33, pp.84 - 94. ⟨10.1016/j.meegid.2015.04.015⟩. ⟨hal-01406325⟩ Document type : ART
Alejandra Medina-Rivera, Matthieu Defrance, Olivier Sand, Carl Herrmann, Jaime A. Castro-Mondragon, et al.. RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Research, Oxford University Press, 2015, 43 (W1), pp.W50--W56. ⟨10.1093/nar/gkv362⟩. ⟨hal-01624369⟩ Document type : ART
Andreas Zanzoni, Charles E. Chapple, Christine Brun. Relationships between predicted moonlighting proteins, human diseases, and comorbidities from a network perspective. Frontiers in Physiology, Frontiers, 2015, ⟨10.3389/fphys.2015.00171⟩. ⟨hal-01202109⟩ Document type : ART
Charles E Chapple, Benoît Robisson, Lionel Spinelli, Celine Guien, Becker Emmanuelle, et al.. Extreme multifunctional proteins identified from a human protein interaction network.. Nature Communications, Nature Publishing Group, 2015, 6 (1), pp.7412. ⟨10.1038/ncomms8412⟩. ⟨hal-01407399⟩ Document type : ART
Charles E Chapple, Carl Herrmann, Christine Brun. PrOnto database : GO term functional dissimilarity inferred from biological data.. Frontiers in Genetics, Frontiers, 2015, 6, pp.200. ⟨10.3389/fgene.2015.00200⟩. ⟨hal-01408050⟩ Document type : ART
Catherine Metzler-Guillemain, Genevieve Victorero, Cyrille Lepoivre, Aurélie Bergon, Miriam Yammine, et al.. Sperm mRNAs and microRNAs as candidate markers for the impact of toxicants on human spermatogenesis: an application to tobacco smoking. Systems Biology in Reproductive Medicine, 2015, 61 (3), pp.139--149. ⟨10.3109/19396368.2015.1022835⟩. ⟨hal-01445195⟩ Document type : ART
G Tiberi, A Pekowska, C Oudin, A Ivey, A Autret, et al.. PcG methylation of the HIST1 cluster defines an epigenetic marker of acute myeloid leukemia. Leukemia, 2015, 29 (5), pp.1202--1206. ⟨10.1038/leu.2014.339⟩. ⟨hal-01614949⟩ Document type : ART
Manon Baëza, Séverine Viala, Marjorie Heim, Amélie Dard, Bruno Hudry, et al.. Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo. eLife, eLife Sciences Publication, 2015, 4 (UNSP e06034), ⟨10.7554/eLife.06034⟩. ⟨hal-01215867⟩ Document type : ART
Allegra Via, Andreas Zanzoni. A prismatic view of protein phosphorylation in health and disease. Frontiers in Genetics, Frontiers, 2015, 6, ⟨10.3389/fgene.2015.00131⟩. ⟨hal-01406317⟩ Document type : ART
Joaquin Zacarias-Cabeza, Mohamed Belhocine, Laurent Vanhille, Pierre Cauchy, Frederic Koch, et al.. Transcription-Dependent Generation of a Specialized Chromatin Structure at the TCRβ Locus. Journal of Immunology, Publisher : Baltimore : Williams & Wilkins, c1950-. Latest Publisher : Bethesda, MD : American Association of Immunologists, 2015, 194 (7), pp.3432--3443. ⟨10.4049/jimmunol.1400789⟩. ⟨hal-01614946⟩ Document type : ART
Laurent Vanhille, Aurélien Griffon, Muhammad Ahmad Maqbool, Joaquin Zacarias-Cabeza, Lan T.M. Dao, et al.. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Nature Communications, Nature Publishing Group, 2015, 6, pp.6905. ⟨10.1038/ncomms7905⟩. ⟨hal-01614948⟩ Document type : ART
Lydie Pradel, Laurent Vanhille, Salvatore Spicuglia. Projet européen \textitBlueprint: Vers une caractérisation épigénomique du système immunitaire. médecine/sciences, EDP Sciences, 2015, 31 (3), pp.236--238. ⟨10.1051/medsci/20153103003⟩. ⟨hal-01612098⟩ Document type : ART
Aurélien Griffon, Quentin Barbier, Jordi Dalino, Jacques van Helden, Salvatore Spicuglia, et al.. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape. Nucleic Acids Research, Oxford University Press, 2015, 43 (e27), ⟨10.1093/nar/gku1280⟩. ⟨hal-01219379⟩ Document type : ART
Caroline Pical-Izard, Roberto Crocchiolo, Samuel Granjeaud, Eloise Kochbati, Sylvaine Just-Landi, et al.. Reconstitution of Natural Killer Cells in HLA-Matched HSCT after Reduced-Intensity Conditioning: Impact on Clinical Outcome. Biology of Blood and Marrow Transplantation, Elsevier, 2015, 21 (3), pp.429-439. ⟨10.1016/j.bbmt.2014.11.681⟩. ⟨hal-01108575⟩ Document type : ART
Samuel Rommelaere, Virginie Millet, Pascal Rihet, Scott Atwell, Emmanuèle Helfer, et al.. Serum Pantetheinase/Vanin Levels Regulate Erythrocyte Homeostasis and Severity of Malaria. American Journal of Pathology, American Society for Investigative Pathology, 2015, 185 (11), pp.3039-3052. ⟨10.1016/j.ajpath.2015.07.011⟩. ⟨hal-01595898⟩ Document type : ART
Audrey Bouchet, Nathalie Sakakini, Michèle El Atifi, Céline Le Clec'H, Elke Braeuer-Krisch, et al.. Identification of AREG and PLK1 pathway modulation as a potential key of the response of intracranial 9L tumor to microbeam radiation therapy. International Journal of Cancer, Wiley, 2015, 136 (11), pp.2705-2716. ⟨10.1002/ijc.29318⟩. ⟨hal-01595900⟩ Document type : ART
Y. Labiad, C. Mercier, I. Vadim, L. Farnault, J. Colle, et al.. Inflammation and sepsis as part of hematopoietic stem cell transplantation: a transcriptomic approach. Bone Marrow Transplantation, Nature Publishing Group, 2015, 50, pp.S418. ⟨hal-01595899⟩ Document type : ART
A. Brisebarre, B. Kumulungui, S. Sawadogo, S. Afridi, F. Fumoux, et al.. Genome-wide significant linkage to IgG subclass responses against Plasmodium falciparum antigens on chromosomes 8p22-p21, 9q34 and 20q13. Genes and Immunity, Nature Publishing Group: Open Access Hybrid Model Option B, 2015, 16 (3), pp.187-192. ⟨10.1038/gene.2014.66⟩. ⟨hal-01595902⟩ Document type : ART
Angelo Facchiano, Claudia Angelini, Roberta Bosotti, Alessandro Guffanti, Anna Marabotti, et al.. Preface: BITS2014, the annual meeting of the Italian Society of Bioinformatics. BMC Bioinformatics, BioMed Central, 2015, 16 (Suppl 9), ⟨10.1186/1471-2105-16-S9-S1⟩. ⟨hal-01406365⟩ Document type : ART
Aurélie Bergon, Raoul Belzeaux, Magali Comte, Florence Pelletier, Mylène Hervé, et al.. CX3CR1 is dysregulated in blood and brain from schizophrenia patients. Schizophrenia Research, Elsevier, 2015, 168 (1-2), pp.434-443. ⟨10.1016/j.schres.2015.08.010⟩. ⟨hal-01575079⟩ Document type : ART
Anne Geiger, Bernadette Tchicaya, Pascal Rihet. Technical data of the transcriptomic analysis performed on tsetse fly symbionts, Sodalis glossinidius and Wigglesworthia glossinidia, harbored, respectively by non-infected, Trypanosoma brucei gambiense infected and self-cured Glossina palpalis gambiensis tsetse flies. Genomics Data, Elsevier, 2015, 4, pp.133-136. ⟨10.1016/j.gdata.2015.04.007⟩. ⟨hal-01595897⟩ Document type : ART
Allegra Via, Bora Uyar, Christine Brun, Andreas Zanzoni. How pathogens use linear motifs to perturb host cell networks. Trends in Biochemical Sciences, Elsevier, 2015, ⟨10.1016/j.tibs.2014.11.001⟩. ⟨hal-01405781⟩ Document type : ART
Carole Sanchez, Céline Baier, Julien G. Colle, Rabie Chelbi, Pascal Rihet, et al.. Natural killer cells in patients with polycythemia vera. Human Immunology, Elsevier, 2015, 76 (9), pp.644-650. ⟨10.1016/j.humimm.2015.09.010⟩. ⟨hal-01595901⟩ Document type : ART
C. Cayrou, B Ballester, I Peiffer, R Fenouil, P. Coulombe, et al.. The chromatin environment shapes DNA replication origin organization and defines origin classes. Genome Research, Cold Spring Harbor Laboratory Press, 2015, 25 (12), pp.1873-1885. ⟨10.1101/gr.192799.115⟩. ⟨hal-01240797⟩ Document type : ART