Publications 2022
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- Norman Abbou, Pauline Piazzola, Jean Gabert, Vincent Ernest, Robin Arcani, et al.. Impact of Molecular Biology in Diagnosis, Prognosis, and Therapeutic Management of BCR::ABL1-Negative Myeloproliferative Neoplasm. Cells, 2022, 12, ⟨10.3390/cells12010105⟩. ⟨hal-04283800⟩ Document type : ART
- Sébastien A Choteau. Exploration of the functions of short open reading frames in monocytes. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2022. Français. ⟨NNT : ⟩. ⟨tel-04413066⟩ Type de document : THESE
- Judith Barbara Zaugg, Pelin Sahlén, Robin Andersson, Meritxell Alberich-Jorda, Wouter de Laat, et al.. Current challenges in understanding the role of enhancers in disease. Nature Structural and Molecular Biology, 2022, 29 (12), pp.1148-1158. ⟨10.1038/s41594-022-00896-3⟩. ⟨hal-03934940⟩ Document type : ART
- Lin Lin, Pugui Li, Xin Liu, Xiuyuan Xie, Liping Liu, et al.. Systematic review and meta-analysis of candidate gene association studies of benign prostate hyperplasia. Systematic Reviews, 2022, 11 (1), pp.60. ⟨10.1186/s13643-022-01914-7⟩. ⟨hal-03831907⟩ Document type : ART
- Anthony Baptista, Aitor Gonzalez, Anaïs Baudot. Universal multilayer network exploration by random walk with restart. Communications Physics, 2022, 5 (1), pp.170. ⟨10.1038/s42005-022-00937-9⟩. ⟨hal-03800682⟩ Document type : ART
- Saswati Saha, Lionel Spinelli, Jaime Castro Mondragon, Anaïs Kervadec, Michaela Lynott, et al.. Genetic architecture of natural variation of cardiac performance from flies to humans. eLife, 2022, 11, ⟨10.7554/eLife.82459⟩. ⟨hal-03934913⟩ Document type : ART
- El Chérif Ibrahim, Victor Gorgievski, Pilar Ortiz-Teba, Raoul Belzeaux, Gustavo Turecki, et al.. Transcriptomic Studies of Antidepressant Action in Rodent Models of Depression: A First Meta-Analysis. International Journal of Molecular Sciences, 2022, 23, ⟨10.3390/ijms232113543⟩. ⟨hal-03851878⟩ Document type : ART
- Anthony Baptista. Modèles multi-couches et méthodes d’exploration de réseaux biologiques. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2022. Français. ⟨NNT : ⟩. ⟨tel-04413102⟩ Type de document : THESE
- Anthony Baptista, Aitor Gonzalez, Anaïs Baudot. Universal Multilayer Network Exploration by Random Walk with Restart. 2022. ⟨hal-03372495v2⟩ Document type : UNDEFINED
- Yashbir Singh, Naidu Subbarao, Abhinav Jaimini, Quincy A Hathaway, Amina Kunovac, et al.. Genome-wide expression reveals potential biomarkers in breast cancer bone metastasis. Journal of Integrative Bioinformatics, 2022, 19 (3), ⟨10.1515/jib-2021-0041⟩. ⟨hal-03831878⟩ Document type : ART
- Pauline Brochet, Barbara Ianni, João P S Nunes, Amanda F Frade, Priscila C Teixeira, et al.. Blood DNA methylation marks discriminate Chagas cardiomyopathy disease clinical forms. Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.1020572⟩. ⟨hal-04117605⟩ Document type : ART
- Saswati Saha, Laurent Perrin, Laurence Röder, Christine Brun, Lionel Spinelli. Epi-MEIF: detecting higher order epistatic interactions for complex traits using mixed effect conditional inference forests. Nucleic Acids Research, 2022, pp.gkac715. ⟨10.1093/nar/gkac715⟩. ⟨hal-03800774⟩ Document type : ART
- Maria Cláudia Silva, Carlos Alessandro Fuzo, Isadora Marques Paiva, Naira Lopes Bibó, Maykon Tavares de Oliveira, et al.. Synonymous mutation rs1129293 is associated with PIK3CG expression and PI3Kγ activation in patients with chronic Chagas cardiomyopathy. Immunobiology, 2022, 227 (5), pp.152242. ⟨10.1016/j.imbio.2022.152242⟩. ⟨hal-03934958⟩ Document type : ART
- Karla Deysiree Alcântara Silva, João Paulo Silva Nunes, Pauline Andrieux, Pauline Brochet, Rafael Ribeiro Almeida, et al.. Chagas Disease Megaesophagus Patients Carrying Variant MRPS18B P260A Display Nitro-Oxidative Stress and Mitochondrial Dysfunction in Response to IFN-γ Stimulus. Biomedicines, 2022, 10 (9), pp.2215. ⟨10.3390/biomedicines10092215⟩. ⟨hal-03831899⟩ Document type : ART
- Pauline Brochet, Barbara Maria Ianni, Laurie Laugier, Amanda Farage Frade, João Paulo Silva Nunes, et al.. Epigenetic regulation of transcription factor binding motifs promotes Th1 response in Chagas disease cardiomyopathy. Frontiers in Immunology, 2022, 13, ⟨10.3389/fimmu.2022.958200⟩. ⟨hal-03831919⟩ Document type : ART
- Michael Baboudjian, Bastien Gondran Tellier, Romain Boissier, Patricia Ancel, Juline Marjollet, et al.. Enhanced level of VCAM in transplant preservation fluid is an independent predictor of Early Kidney Allograft Dysfunction. Frontiers in Immunology, 2022, 13, pp.966951. ⟨10.3389/fimmu.2022.966951⟩. ⟨inserm-03736401⟩ Document type : ART
- Mohamed Belhocine, Mathieu Simonin, José David Abad Flores, Agata Cieslak, Iris Manosalva, et al.. Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes. Genome Research, 2022, 32 (7), pp.1328-1342. ⟨10.1101/gr.266924.120⟩. ⟨hal-03831947⟩ Document type : ART
- Anne-Laure Couderc, Laetitia Ninove, Emilie Nouguerède, Dominique Rey, Marina Rebroin, et al.. Acceptance, efficacy, and safety of COVID-19 vaccination in older patients with cancer. Journal of Geriatric Oncology, 2022, 13 (6), pp.850-855. ⟨10.1016/j.jgo.2022.05.002⟩. ⟨hal-03925558⟩ Document type : ART
- Bertrand Fabre, Sebastien Choteau, Carine Duboé, Carole Pichereaux, Audrey Montigny, et al.. In Depth Exploration of the Alternative Proteome of Drosophila melanogaster. Frontiers in Cell and Developmental Biology, 2022, 10, ⟨10.3389/fcell.2022.901351⟩. ⟨hal-03698006⟩ Document type : ART
- Nori Sadouni. Découverte et caractérisation des éléments silencers par des approches à haut débit. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2022. Français. ⟨NNT : 2022AIXM0184⟩. ⟨tel-04413161⟩ Type de document : THESE
- Walter Santana-Garcia, Jaime Castro-Mondragon, Mónica Padilla-Gálvez, Nga Nguyen, Ana Elizondo-Salas, et al.. RSAT 2022: regulatory sequence analysis tools. Nucleic Acids Research, 2022, ⟨10.1093/nar/gkac312⟩. ⟨hal-03669930⟩ Document type : ART
- Aitor González, Dubut Vincent, Corse Emmanuel, Mekdad Reda, Dechatre Thomas, et al.. VTAM. 2022, ⟨swh:1:dir:24c42ed09e6fcbbecb8784a393c4b7a20d58ac27;origin=https://hal.archives-ouvertes.fr/hal-04463242;visit=swh:1:snp:41e0e84bd834ce2ff79a571903b4d273ef175b80;anchor=swh:1:rel:2d898090347df149afc0c89803d173a17feb695b;path=/⟩. ⟨hal-04463242⟩ : SOFTWARE
- Kaj Chokeshaiusaha, Thanida Sananmuang, Denis Puthier, Catherine Nguyen. A novel cross-species differential tumor classification method based on exosome-derived microRNA biomarkers established by human-dog lymphoid and mammary tumor cell lines' transcription profiles. Veterinary World, 2022, 15 (5), pp.1163-1170. ⟨10.14202/vetworld.2022.1163-1170⟩. ⟨hal-03831863⟩ Document type : ART
- Samia Nisar, Magali Torres, Alassane Thiam, Bruno Pouvelle, Florian Rosier, et al.. Identification of ATP2B4 Regulatory Element Containing Functional Genetic Variants Associated with Severe Malaria. International Journal of Molecular Sciences, 2022, 23 (9), pp.4849. ⟨10.3390/ijms23094849⟩. ⟨hal-03690258⟩ Document type : ART
- Deeya Saha, Marta Iannuccelli, Christine Brun, Andreas Zanzoni, Luana Licata. The intricacy of the viral-human protein interaction networks: resources, data and analyses. Frontiers in Microbiology, 2022, ⟨10.3389/fmicb.2022.849781⟩. ⟨hal-03631120⟩ Document type : ART
- Thi Thom Tran. Étude de la signalisation immunitaire et inflammatoire dans un modèle murin de cardiopathie septique et dans un modèle cellulaire de cardiotoxicité à l'immunothérapie anticancéreuse. Sciences du Vivant [q-bio]. Aix-Marseille Université, 2022. Français. ⟨NNT : 0000AIXM0000⟩. ⟨tel-04413196⟩ Type de document : THESE
- Bernard Stikker, Grégoire Stik, Antoinette van Ouwerkerk, Lianne Trap, Salvatore Spicuglia, et al.. Severe COVID-19-associated variants linked to chemokine receptor gene control in monocytes and macrophages. Genome Biology, 2022, 23 (1), pp.96. ⟨10.1186/s13059-022-02669-z⟩. ⟨hal-03685514⟩ Document type : ART
- Monique Andrade Baron, Ludmila Rodrigues Pinto Ferreira, Priscila Camillo Teixeira, Ana Iochabel Soares Moretti, Soares Moretti, et al.. Matrix Metalloproteinase 2 and 9 Enzymatic Activities are Selectively Increased in the Myocardium of Chronic Chagas Disease Cardiomyopathy Patients: Role of TIMPs. Frontiers in Cellular and Infection Microbiology, 2022, 12, ⟨10.3389/fcimb.2022.836242⟩. ⟨hal-03685525⟩ Document type : ART
- Alexandre Xerri, Frédéric Gallardo, F. Kober, Calypso Mathieu, Natacha Fourny, et al.. Female hormones prevent sepsis-induced cardiac dysfunction: an experimental randomized study. Scientific Reports, 2022, 12 (1), pp.4939. ⟨10.1038/s41598-022-08889-4⟩. ⟨hal-03678802⟩ Document type : ART
- Justine Solignac, Laure Farnault, Thomas Robert, Raphaelle Fanciullino, Sylvain Choquet, et al.. Successful treatment with adapted high dose methotrexate in a hemodialysis patient with primary central nervous system lymphoma: 100 mg/m2 seems sufficient. Nefrologia, 2022, 42 (2), pp.130-134. ⟨10.1016/j.nefro.2021.03.004⟩. ⟨hal-03726638⟩ Document type : ART
- Justine Solignac, Laure Farnault, Thomas Robert, Raphaëlle Fanciullino, Sylvain Choquet, et al.. Successful treatment with adapted high dose methotrexate in a hemodialysis patient with primary central nervous system lymphoma: 100 mg/m2 seems sufficient. Nefrología (English Edition), 2022, 42 (2), pp.130-134. ⟨10.1016/j.nefroe.2022.02.007⟩. ⟨hal-03939695⟩ Document type : ART
- Antoinette van Ouwerkerk, Fernanda Bosada, Karel van Duijvenboden, Arjan Houweling, Koen Scholman, et al.. Patient-Specific TBX5-G125R Variant Induces Profound Transcriptional Deregulation and Atrial Dysfunction. Circulation, 2022, 145 (8), pp.606-619. ⟨10.1161/CIRCULATIONAHA.121.054347⟩. ⟨hal-03685537⟩ Document type : ART
- Pascale Paul, Christophe Picard, Luc Lyonnet, Noémie Resseguier, Lucas Hubert, et al.. FCGR2A-HH Gene Variants Encoding the Fc Gamma Receptor for the C-Reactive Protein Are Associated with Enhanced Monocyte CD32 Expression and Cardiovascular Events' Recurrence after Primary Acute Coronary Syndrome. Biomedicines, 2022, 10 (2), pp.495. ⟨10.3390/biomedicines10020495⟩. ⟨inserm-03581535⟩ Document type : ART
- Fayrouz Hammal, Pierre De langen, Aurélie Bergon, Fabrice Lopez, Benoit Ballester. ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments. Nucleic Acids Research, 2022, ⟨10.1093/nar/gkab996⟩. ⟨hal-03433360⟩ Document type : ART
- Aritania Sousa Santos, Edécio Cunha-Neto, Nelson Vinicius Gonfinetti, Fernanda Bernardi Bertonha, Pauline Brochet, et al.. Prevalence of Inflammatory Pathways Over Immuno-Tolerance in Peripheral Blood Mononuclear Cells of Recent-Onset Type 1 Diabetes. Frontiers in Immunology, 2022, 12, ⟨10.3389/fimmu.2021.765264⟩. ⟨hal-03566521⟩ Document type : ART
- Florian Rosier, Nicolas Fernandez Nuñez, Magali Torres, Béatrice B. Loriod, Pascal Rihet, et al.. Transcriptional Response in a Sepsis Mouse Model Reflects Transcriptional Response in Sepsis Patients. International Journal of Molecular Sciences, In press, 23 (2), pp.821. ⟨10.3390/ijms23020821⟩. ⟨hal-03528060⟩ Document type : ART
- Saswati Saha, Lionel Spinelli, Jaime Castro Mondragon, Anaïs Kervadec, Michaela Lynott, et al.. Genetic architecture of natural variation of cardiac performance from flies to humans. eLife, 2022, 11, pp.e82459. ⟨10.7554/eLife.82459⟩. ⟨hal-04240693⟩ Document type : ART
- Jérémie Perrin, Olivier Destaing, C. Brun. Discovery of potential functional paths by integration of phospho-proteomics data in the PPI network using a RWR framework. Proc. JOBIM, 2022, JOBIM 2022, July 05-08 - Proceedings, pp. 139-145. ⟨hal-03842445⟩ Document type : ART
- Sébastien Salas, Vanessa Pauly, Margaux Damge, Veronica Orleans, Guillaume Fond, et al.. Intensive end-of-life care in acute leukemia from a French national hospital database study (2017–2018). BMC Palliative Care, 2022, 21 (1), pp.45. ⟨10.1186/s12904-022-00937-0⟩. ⟨hal-03925699⟩ Document type : ART
- S. Marquet. "Identification of Host Factors Involved in Pathogenic Mechanisms of Infectious Diseases". 2022. ⟨hal-03890549⟩ Document type : ISSUE
- Thomas Denecker, Imane Messak, Anliat Mohamed, Chiara Antoinat, Arthur Le Bars, et al.. EMERGEN-BioInfo The digital platform for the French SARS-CoV-2 genomic surveillance and research program. Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , 2022, ⟨10.5281/ZENODO.6778707⟩. ⟨hal-04495542⟩ Document type : ART
