Publications 2021

Quentin Ferré, Cécile Capponi, Denis Puthier. OLOGRAM-MODL: mining enriched n-wise combinations of genomic features with Monte Carlo and dictionary learning. NAR Genomics and Bioinformatics, 2021, 3 (4), ⟨10.1093/nargab/lqab114⟩. ⟨hal-03549602⟩ Document type : ART
Michaël Pierrelée, Ana Reynders, Fabrice Lopez, Aziz Moqrich, Laurent Tichit, et al.. Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs). Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-93128-5⟩. ⟨hal-03358832⟩ Document type : ART
Lamia Madaci, Julien Colle, Geoffroy Venton, Laure Farnault, Béatrice Loriod, et al.. The contribution of single-cell analysis of acute leukemia in the therapeutic strategy. Biomarker Research, 2021, 9 (1), ⟨10.1186/s40364-021-00300-0⟩. ⟨hal-03358838⟩ Document type : ART
F. Carlier, M. Li, L. Maroc, R. Debuchy, C. Souaid, et al.. Loss of EZH2-like or SU(VAR)3–9-like proteins causes simultaneous perturbations in H3K27 and H3K9 tri-methylation and associated developmental defects in the fungus Podospora anserina. Epigenetics & Chromatin, 2021, 14 (1), ⟨10.1186/s13072-021-00395-7⟩. ⟨hal-03283006⟩ Document type : ART
David Santiago-Algarra, Charbel Souaid, Himanshu Singh, Lan T M Dao, Saadat Hussain, et al.. Epromoters function as a hub to recruit key transcription factors required for the inflammatory response. Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-26861-0⟩. ⟨hal-03513051⟩ Document type : ART
João Paulo Silva Nunes, Pedro M Moraes-Vieira, Christophe Chevillard, Edecio Cunha-Neto. Editorial: Mitochondria at the Crossroads of Immunity and Inflammatory Tissue Damage. Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.810787⟩. ⟨hal-03513101⟩ Document type : ART
Priscila Camillo Teixeira, Axel Ducret, Hanno Langen, Everson Nogoceke, Ronaldo Honorato Barros Santos, et al.. Impairment of Multiple Mitochondrial Energy Metabolism Pathways in the Heart of Chagas Disease Cardiomyopathy Patients. Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.755782⟩. ⟨hal-03513079⟩ Document type : ART
João Paulo Silva Nunes, Pauline Andrieux, Pauline Brochet, Rafael Ribeiro Almeida, Eduardo Kitano, et al.. Co-Exposure of Cardiomyocytes to IFN-γ and TNF-α Induces Mitochondrial Dysfunction and Nitro-Oxidative Stress: Implications for the Pathogenesis of Chronic Chagas Disease Cardiomyopathy. Frontiers in Immunology, 2021, 12, ⟨10.3389/fimmu.2021.755862⟩. ⟨hal-03513096⟩ Document type : ART
Guillaume Andrieu, Milena Kohn, Mathieu Simonin, Charlotte Smith, Agata Cieslak, et al.. PRC2 loss of function confers a targetable vulnerability to BET proteins in T-ALL. Blood, 2021, 138 (19), pp.1855-1869. ⟨10.1182/blood.2020010081⟩. ⟨hal-03513058⟩ Document type : ART
Pauline Andrieux, Christophe Chevillard, Edecio Cunha-Neto, João Paulo Silva Nunes. Mitochondria as a Cellular Hub in Infection and Inflammation. International Journal of Molecular Sciences, 2021, 22 (21), pp.11338. ⟨10.3390/ijms222111338⟩. ⟨hal-03406073⟩ Document type : ART
Saswati Saha, Lionel Spinelli, Jaime Castro-Mondragon, Anaïs Kervadec, Laurent Kremmer, et al.. Genetic architecture of natural variations of cardiac performance in flies. 2021. ⟨hal-03386388⟩ Document type : UNDEFINED
Nishant Thakur, Nathalie Pujol, Jacques van Helden, Robert H Waterston, Ladeana W. Hillier, et al.. An integrated analysis tool reveals intrinsic biases in gene set enrichment. 2021. ⟨hal-03374674⟩ Document type : UNDEFINED
Tao Wang, Daniel Perazza, Fayçal Boussouar, Matteo Cattaneo, Alexandre Bougdour, et al.. ATAD2 controls chromatin-bound HIRA turnover. Life Science Alliance, 2021, ⟨10.26508/lsa.202101151⟩. ⟨hal-03359419⟩ Document type : ART
Quentin Ferré, Jeanne Chèneby, Denis Puthier, Cécile Capponi, Benoît Ballester. Anomaly detection in genomic catalogues using unsupervised multi-view autoencoders. BMC Bioinformatics, 2021, 22 (1), pp.460. ⟨10.1186/s12859-021-04359-2⟩. ⟨inserm-03356659⟩ Document type : ART
Nathalie Arquier, Marianne Bjordal, Philippe Hammann, Lauriane Kuhn, Pierre Léopold. Brain adiponectin signaling controls peripheral insulin response in Drosophila.. Nature Communications, 2021, 12 (1), pp.5633. ⟨10.1038/s41467-021-25940-6⟩. ⟨hal-03366361⟩ Document type : ART
Jacques van Helden, Colin Butler, Guillaume Achaz, Bruno Canard, Didier Casane, et al.. An appeal for an objective, open, and transparent scientific debate about the origin of SARS-CoV-2. The Lancet, 2021, 398 (10309), pp.1402-1404. ⟨10.1016/S0140-6736(21)02019-5⟩. ⟨hal-03358748⟩ Document type : ART
Hélène Chiapello, Thomas Denecker, Gildas Le Corguillé, Pierre Poulain, Denis Puthier, et al.. The IFB e-Learning Working Group. JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France. . ⟨hal-03296617⟩ Document type : POSTER
Sebastien A Choteau, Audrey Wagner, Philippe Pierre, Lionel Spinelli, Christine Brun. MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. Database - The journal of Biological Databases and Curation, 2021, 2021, ⟨10.1093/database/baab032⟩. ⟨hal-03268485⟩ Document type : ART
Mélanie Velier, Stéphane Priet, Romain Appay, Thérèse Atieh, Hubert Lepidi, et al.. Severe and Irreversible Pancytopenia Associated With SARS-CoV-2 Bone Marrow Infection in a Patient With Waldenstrom Macroglobulinemia. Clinical Lymphoma, Myeloma & Leukemia, 2021, 21 (6), pp.e503-e505. ⟨10.1016/j.clml.2021.01.005⟩. ⟨hal-03282925⟩ Document type : ART
Florian Rosier, Audrey Brisebarre, Claire Dupuis, Sabrina Baaklini, Denis Puthier, et al.. Genetic Predisposition to the Mortality in Septic Shock Patients: From GWAS to the Identification of a Regulatory Variant Modulating the Activity of a CISH Enhancer. International Journal of Molecular Sciences, 2021, 22, ⟨10.3390/ijms22115852⟩. ⟨hal-03245766⟩ Document type : ART
Aurore Touzart, Anand Mayakonda, Charlotte Smith, Joschka Hey, Reka Toth, et al.. Epigenetic analysis of patients with T-ALL identifies poor outcomes and a hypomethylating agent-responsive subgroup. Science Translational Medicine, 2021, 13 (595), pp.eabc4834. ⟨10.1126/scitranslmed.abc4834⟩. ⟨hal-03282998⟩ Document type : ART
Elise Kaspi, Shirley Fritz, Julien Colle, Florent Amatore, Diane Frankel, et al.. A rare case of pleural localisation of both metastatic Merkel cell carcinoma and chronic lymphocytic leukaemia. Cytopathology, 2021, ⟨10.1111/cyt.12947⟩. ⟨hal-03141118⟩ Document type : ART
Erwan Sallard, José Halloy, Didier Casane, Etienne Decroly, Jacques van Helden. Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review. Environmental Chemistry Letters, 2021, 19 (2), pp.769-785. ⟨10.1007/s10311-020-01151-1⟩. ⟨hal-03243289⟩ Document type : ART
Najla Ksouri, Jaime Castro-Mondragón, Francesc Montardit-Tarda, Jacques van Helden, Bruno Contreras-Moreira, et al.. Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example. Plant Physiology, 2021, 185 (3), pp.1242-1258. ⟨10.1093/plphys/kiaa091⟩. ⟨hal-03243277⟩ Document type : ART
Aitor Gonzalez, Vincent Dubut, Emmanuel Corse, Reda Mekdad, Thomas Dechatre, et al.. VTAM: A robust pipeline for validating metabarcoding data using internal controls. 2021. ⟨hal-03144831⟩ Document type : UNDEFINED
Maryem Ouarhache, Sandrine Marquet, Amanda Farage Frade, Ariela Mota Ferreira, Barbara Ianni, et al.. Rare Pathogenic Variants in Mitochondrial and Inflammation-Associated Genes May Lead to Inflammatory Cardiomyopathy in Chagas Disease. Journal of Clinical Immunology, 2021, ⟨10.1007/s10875-021-01000-y⟩. ⟨hal-03162042⟩ Document type : ART
Andreia Mendes, Julien P Gigan, Christian Rodriguez Rodrigues, Sébastien A Choteau, Doriane Sanseau, et al.. Proteostasis in dendritic cells is controlled by the PERK signaling axis independently of ATF4. Life Science Alliance, 2021, 4 (2), pp.e202000865. ⟨10.26508/lsa.202000865⟩. ⟨hal-03121710⟩ Document type : ART
Sandeep Appunni, Deepika Gupta, Muni Rubens, Anjani Kumar Singh, Vishnu Swarup, et al.. Targeting ROCK2 isoform with its widely used inhibitors for faster post-stroke recovery. Indian Journal of Biochemistry & Biophysics, 2021, 58, pp.27-34. ⟨hal-03283038⟩ Document type : ART
Virender Sharma, Chetan Jinadatha, Eric Lichtfouse, Etienne Decroly, Jacques van Helden, et al.. COVID-19 epidemiologic surveillance using wastewater. Environmental Chemistry Letters, 2021, 19, pp.1911-1915. ⟨10.1007/s10311-021-01188-w⟩. ⟨hal-03125589⟩ Document type : ART
Carole Robert, Jean Imbert, Mohamed Lajnef, Camille Noûs, Gilbert Cabiran, et al.. Production de savoirs à partir de données collectées par les associations de malades : L’exemple de la fibromyalgie. Médecine/Sciences, 2021, 37 (1), pp.81-88. ⟨10.1051/medsci/2020269⟩. ⟨hal-03120847⟩ Type de document : ART
Mengqing Gao, Jin Wang, Sophie Rousseaux, Minjia Tan, Lulu Pan, et al.. Metabolically controlled histone H4K5 acylation/acetylation ratio drives BRD4 genomic distribution. Cell Reports, 2021, 36 (4), pp.109460. ⟨10.1016/j.celrep.2021.109460⟩. ⟨hal-03335489⟩ Document type : ART
Karim Arafah, Fabrice Lopez, Caroline Cazin, Zine‐eddine Kherraf, Virginie Tassistro, et al.. Defect in the nuclear pore membrane glycoprotein 210-like gene is associated with extreme uncondensed sperm nuclear chromatin and male infertility: a case report. Human Reproduction, 2021, 36 (3), pp.693-701. ⟨10.1093/humrep/deaa329⟩. ⟨hal-02985525⟩ Document type : ART
Desiré Casares-Marfil, Mariana Strauss, Pau Bosch-Nicolau, María Silvina Lo Presti, Israel Molina, et al.. A Genome-Wide Association Study Identifies Novel Susceptibility loci in Chronic Chagas Cardiomyopathy. Clinical Infectious Diseases, 2021, 73 (4), pp.672-679. ⟨10.1093/cid/ciab090⟩. ⟨hal-03249865⟩ Document type : ART