Publications 2019
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- Florian Rosier. Au-delà des études d'association à l'échelle du génome : Étude transcriptomique et identification des variants régulateurs impliqués dans le développement du sepsis. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2019. Français. ⟨NNT : 2019AIXM0542⟩. ⟨tel-04426162⟩ Type de document : THESE
- Jeanne Chèneby. Etude des éléments cis-régulateurs : identification et caractérisation. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2019. Français. ⟨NNT : 2019AIXM0520⟩. ⟨tel-04426821⟩ Type de document : THESE
- Ashutosh Kumar, Vikas Pareek, Himanshu N Singh, Muneeb A Faiq, Ravi K Narayan, et al.. Altered Expression of a Unique Set of Genes Reveals Complex Etiology of Schizophrenia. Frontiers in Psychiatry, 2019, 10, ⟨10.3389/fpsyt.2019.00906⟩. ⟨hal-02458882⟩ Document type : ART
- Mirna Swayden, George Alzeeb, Rawand Masoud, Yolande Berthois, Stéphane Audebert, et al.. PML hyposumoylation is responsible for the resistance of pancreatic cancer. FASEB Journal, 2019, 33 (11), pp.12447-12463. ⟨10.1096/fj.201901091R⟩. ⟨inserm-02439811⟩ Document type : ART
- Alassane Thiam, Michel Sanka, Rokhaya Ndiaye Diallo, Magali Torres, Babacar Mbengue, et al.. Gene expression profiling in blood from cerebral malaria patients and mild malaria patients living in Senegal. BMC Medical Genomics, 2019, 12 (1), pp.148. ⟨10.1186/s12920-019-0599-z⟩. ⟨hal-02340853⟩ Document type : ART
- Guillaume Charbonnier. Décryptage de dynamiques épigénomiques au cours de la thymopoïèse et de la spermatogénèse en appliquant une méthodologie de recherche reproductible à des données de séquençage à haut débit. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2019. Français. ⟨NNT : 2019AIXM0285⟩. ⟨tel-04426858⟩ Type de document : THESE
- Geoffroy Venton, Mihai Turcanu, Julien Colle, Franck Thuny, Safia Chebrek, et al.. Pulmonary hypertension in patients with myeloproliferative neoplasms: A large cohort of 183 patients. European Journal of Internal Medicine, 2019, 68, pp.71-75. ⟨10.1016/j.ejim.2019.08.004⟩. ⟨hal-02458917⟩ Document type : ART
- Saadat Hussain. High-throughput study of silencer elements in T cells. Life Sciences [q-bio]. Aix-Marseille Université, 2019. English. ⟨NNT : 2019AIXM0215⟩. ⟨tel-04426960⟩ Document type : THESE
- Walter Santana-Garcia, Maria Rocha-Acevedo, Lucia Ramirez-Navarro, Yvon Mbouamboua, Denis Thieffry, et al.. RSAT variation-tools: An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding. Computational and Structural Biotechnology Journal, 2019, ⟨10.1016/j.csbj.2019.09.009⟩. ⟨hal-02458940⟩ Document type : ART
- Yvon Mbouamboua. Combinaison d’approches expérimentales et bioinformatiques pour caractériser les intéractions entre Plasmodium falciparum et son hôte humain. Bio-Informatique, Biologie Systémique [q-bio.QM]. Aix-Marseille Université, 2019. Français. ⟨NNT : 2019AIXM0332⟩. ⟨tel-04427015⟩ Type de document : THESE
- Sarvenaz Choobdar, Mehmet Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, et al.. Assessment of network module identification across complex diseases. Nature Methods, 2019, 16 (9), pp.843-852. ⟨10.1038/s41592-019-0509-5⟩. ⟨hal-02333148⟩ Document type : ART
- Marius Gheorghe, Geir Kjetil Sandve, Aziz Khan, Jeanne Chèneby, Benoit Ballester, et al.. A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research, 2019, 47 (14), pp.7715-7715. ⟨10.1093/nar/gkz582⟩. ⟨hal-02531478⟩ Document type : ART
- Andreas Zanzoni, Diogo Ribeiro, Christine Brun. Understanding protein multifunctionality: from short linear motifs to cellular functions. Cellular and Molecular Life Sciences, 2019, ⟨10.1007/s00018-019-03273-4⟩. ⟨hal-02279538⟩ Document type : ART
- Thi Tran, Calypso Mathieu, Magali Torres, Béatrice B. Loriod, Linh Thuy Lê, et al.. Effect of landiolol on sex-related transcriptomic changes in the myocardium during sepsis. Intensive Care Medicine Experimental, 2019, 7 (1), ⟨10.1186/s40635-019-0263-0⟩. ⟨hal-02279120⟩ Document type : ART
- Jon Ison, Hans Ienasescu, Piotr Chmura, Emil Rydza, Hervé Ménager, et al.. The bio.tools registry of software tools and data resources for the life sciences. Genome Biology, 2019, 20 (164), pp.1-4. ⟨10.1186/s13059-019-1772-6⟩. ⟨hal-02408472⟩ Document type : ART
- Robin Arcani, Geoffroy Venton, Julien Colle, Pierre Suchon, Vadim Ivanov, et al.. Efficacy and safety of autologous stem cell transplantation after induction therapy with lenalidomide, bortezomib, and dexamethasone. European Journal of Haematology, 2019, ⟨10.1111/ejh.13297⟩. ⟨hal-02267221⟩ Document type : ART
- Dorian Chabbert, Xavier Caubit, Pierre L. Roubertoux, Michèle Carlier, Bianca Habermann, et al.. Postnatal Tshz3 Deletion Drives Altered Corticostriatal Function and Autism Spectrum Disorder–like Behavior. Biological Psychiatry, 2019, 86 (4), pp.274-285. ⟨10.1016/j.biopsych.2019.03.974⟩. ⟨hal-02323149⟩ Document type : ART
- Pierre Cauchy, Brigitte Kahn-Perlès, Pierre Ferrier, Jean Imbert, Patrick Lecine. 2HybridTools, a handy software to facilitate clone identification and mutation mapping from yeast two-hybrid screening. PeerJ, 2019, 7, pp.e7245. ⟨10.7717/peerj.7245⟩. ⟨hal-02267335⟩ Document type : ART
- L. Farnault, G. Venton, B. Pourroy, Noemie Jourde-Chiche, V. Ivanov, et al.. Severe renal insufficiency is not an absolute pitfall to autologous stem cell transplantation with BeEAM (bendamustine, etoposide, cytarabine, melphalan) conditioning regimen. Bone Marrow Transplantation, 2019, 54 (7), pp.1173-1175. ⟨10.1038/s41409-019-0467-7⟩. ⟨hal-02458923⟩ Document type : ART
- K. Chokeshaiusaha, D. Puthier, Cong Tu Nguyen, P. Sudjaidee, T. Sananmuang. Factor Analysis for Bicluster Acquisition (FABIA) revealed vincristine-sensitive transcript pattern of canine transmissible venereal tumors. Heliyon, 2019, 5 (5), pp.e01558. ⟨10.1016/j.heliyon.2019.e01558⟩. ⟨hal-02301294⟩ Document type : ART
- Aitor Gonzalez, Marie Artufel, Pascal Rihet. TAGOOS: genome-wide supervised learning of non-coding loci associated to complex phenotypes. Nucleic Acids Research, 2019, ⟨10.1093/nar/gkz320⟩. ⟨hal-02119716⟩ Document type : ART
- Otoniel Rodríguez-Jorge, Linda Kempis-Calanis, Wassim Abou-Jaoudé, Darely Gutiérrez-Reyna, Céline Hernandez, et al.. Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4 + T cell activation. Science Signaling, 2019, 12 (577), pp.eaar3641. ⟨10.1126/scisignal.aar3641⟩. ⟨hal-02154906⟩ Document type : ART
- Sineewanlaya Wichit, Rodolphe Hamel, Andreas Zanzoni, Fode Diop, Alexandra Cribier, et al.. SAMHD1 Enhances Chikungunya and Zika Virus Replication in Human Skin Fibroblasts. International Journal of Molecular Sciences, 2019, 20 (7), pp.1695. ⟨10.3390/ijms20071695⟩. ⟨hal-02094916⟩ Document type : ART
- Gerson Hernández‐acevedo, Oscar López‐portales, Darely Gutiérrez‐reyna, Erick Cuevas‐fernández, Linda Kempis‐calanis, et al.. Protein complexes associated with β‐catenin differentially influence the differentiation profile of neonatal and adult CD8 + T cells. Journal of Cellular Physiology, 2019, ⟨10.1002/jcp.28502⟩. ⟨hal-02154920⟩ Document type : ART
- Wiam Saadi, Yasmina Kermezli, Lan Dao, Evelyne Mathieu, David Santiago-Algarra, et al.. A critical regulator of Bcl2 revealed by systematic transcript discovery of lncRNAs associated with T-cell differentiation. Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-41247-5⟩. ⟨hal-02078114⟩ Document type : ART
- Andreas Zanzoni, Lionel Spinelli, Diogo Ribeiro, Gian Gaetano Tartaglia, Christine Brun. Post-transcriptional regulatory patterns revealed by protein-RNA interactions. Scientific Reports, 2019, 9 (1), pp.4302. ⟨10.1038/s41598-019-40939-2⟩. ⟨hal-02070124⟩ Document type : ART
- Yvon Mbouamboua, Koukouikila-Koussounda Félix, Ntoumi Francine, Selorme Adukpo, Michael Kombo, et al.. Sub-microscopic Plasmodium falciparum infections in matched peripheral, placental and umbilical cord blood samples from asymptomatic Congolese women at delivery. Acta Tropica, 2019, 193, pp.142-147. ⟨10.1016/j.actatropica.2019.03.001⟩. ⟨hal-02078131⟩ Document type : ART
- Marius Gheorghe, Geir Kjetil Sandve, Aziz Khan, Jeanne Chèneby, Benoit Ballester, et al.. A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research, 2019, ⟨10.1093/nar/gky1210⟩. ⟨hal-01980383⟩ Document type : ART
- Aurore Touzart, Etienne Lengliné, Mehdi Latiri, Mohamed Belhocine, Charlotte Smith, et al.. Epigenetic Silencing Affects l-Asparaginase Sensitivity and Predicts Outcome in T-ALL. Clinical Cancer Research, 2019, ⟨10.1158/1078-0432.CCR-18-1844⟩. ⟨hal-02078351⟩ Document type : ART
- Claire Rioualen, Lucie Charbonnier-Khamvongsa, Julio Collado-Vides, Jacques van Helden. Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks. Current Protocols in Bioinformatics, 2019, pp.e72. ⟨10.1002/cpbi.72⟩. ⟨hal-02078136⟩ Document type : ART
- Fabrice Lopez, Guillaume Charbonnier, Yasmina Kermezli, Mohamed Belhocine, Quentin Ferré, et al.. Explore, edit and leverage genomic annotations using Python GTF toolkit. Bioinformatics, 2019, ⟨10.1093/bioinformatics/btz116⟩. ⟨hal-02078147⟩ Document type : ART
- Yasmina Kermezli, Wiam Saadi, Mohamed Belhocine, E. L. Mathieu, Marc-Antoine Garibal, et al.. A comprehensive catalog of LncRNAs expressed in T-cell acute lymphoblastic leukemia. Leukemia & lymphoma, 2019, pp.1-13. ⟨10.1080/10428194.2018.1551534⟩. ⟨hal-02078367⟩ Document type : ART
- Diogo Ribeiro, Galadriel Briere, Benoit Bely, Lionel Spinelli, Christine Brun. MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins. Nucleic Acids Research, 2019, ⟨10.1093/nar/gky1039⟩. ⟨hal-01907669⟩ Document type : ART
- Pierre Suchon, Noémie Resseguier, Manal Ibrahim, Alexia Robin, Geoffroy Venton, et al.. Common Risk Factors Add to Inherited Thrombophilia to Predict Venous Thromboembolism Risk in Families. TH Open, 2019, 03 (01), pp.e28-e35. ⟨10.1055/s-0039-1677807⟩. ⟨hal-02267213⟩ Document type : ART
- Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, et al.. Involvement of G-quadruplex regions in mammalian replication origin activity. Nature Communications, 2019, 10 (1), pp.3274. ⟨10.1038/s41467-019-11104-0⟩. ⟨hal-03101805⟩ Document type : ART