Publications 2018

Mustafa Abu El Qumsan. Assessment of Supervised Classification Methods for the Analysis of RNA-seq Data. Quantitative Methods [q-bio.QM]. Aix-Marseille Université, 2018. English. ⟨NNT : 2018AIXM0582⟩. ⟨tel-04474926⟩ Document type : THESE
Michel Sanka. Compréhension des mécanismes moléculaires et des facteurs génétiques impliqués dans le paludisme sévère : analyse des profils transcriptomiques et processus biologiques caractéristiques du neuropaludisme et méta-analyse sur des gènes associés à la résistance au paludisme. Sciences du Vivant [q-bio]. Aix-Marseille Université, 2018. Français. ⟨NNT : 2018AIXM0615⟩. ⟨tel-04474936⟩ Type de document : THESE
Diogo Ribeiro. Discovery of the role of protein-RNA interactions in protein multifunctionality and cellular complexity. Quantitative Methods [q-bio.QM]. Aix-Marseille Université, 2018. English. ⟨NNT : 2018AIXM0449⟩. ⟨tel-04474960⟩ Document type : THESE
Alassane Thiam, Sabrina Baaklini, Babacar Mbengue, Samia Nisar, Maryam Diarra, et al.. NCR3 polymorphism, haematological parameters, and severe malaria in Senegalese patients. PeerJ, 2018, 6, pp.e6048. ⟨10.7717/peerj.6048⟩. ⟨hal-01947567⟩ Document type : ART
Christophe Chevillard, João Paulo Silva Nunes, Amanda Farage Frade, Rafael Ribeiro Almeida, Ramendra Pati Pandey, et al.. Disease Tolerance and Pathogen Resistance Genes May Underlie Trypanosoma cruzi Persistence and Differential Progression to Chagas Disease Cardiomyopathy. Frontiers in Immunology, 2018, 9, ⟨10.3389/fimmu.2018.02791⟩. ⟨hal-01945282⟩ Document type : ART
Maria M Silva, Marcela Davoli-Ferreira, Tiago Medina, Renata Sesti-Costa, Grace Silva, et al.. Canonical PI3Kγ signaling in myeloid cells restricts Trypanosoma cruzi infection and dampens chagasic myocarditis. Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-03986-3⟩. ⟨hal-01784218⟩ Document type : ART
Samuel Eneọjọ Abah, Florence Burte, S. Marquet, Biobele Brown, Francis Akinkunmi, et al.. Low plasma haptoglobin is a risk factor for life-threatening childhood severe malarial anemia and not an exclusive consequence of hemolysis. Scientific Reports, 2018, 8 (1), pp.17527. ⟨10.1038/s41598-018-35944-w⟩. ⟨hal-01961667⟩ Document type : ART
Hermenegildo Taboada, Niurka Meneses, Michael Dunn, Carmen Vargas-Lagunas, Natasha Buchs, et al.. Proteins in the periplasmic space and outer membrane vesicles of Rhizobium etli CE3 grown in minimal medium are largely distinct and change with growth phase. Microbiology, 2018, ⟨10.1099/mic.0.000720⟩. ⟨hal-01981959⟩ Document type : ART
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, et al.. Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila. eLife, 2018, 7, ⟨10.7554/eLife.38853⟩. ⟨hal-01882683⟩ Document type : ART
Kaj Chokeshaiusaha, Thanida Sananmuang, Denis Puthier, Catherine Nguyen. An innovative approach to predict immune-associated genes mutually targeted by cow and human milk microRNAs expression profiles. Veterinary World, 2018, 11 (9), pp.1203-1209. ⟨10.14202/vetworld.2018.1203-1209⟩. ⟨hal-01977762⟩ Document type : ART
Hitoshi Shiota, Sophie Barral, Thierry Buchou, Minjia Tan, Yohann Couté, et al.. Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells. Cell Reports, 2018, 24 (13), pp.3477 - 3487.e6. ⟨10.1016/j.celrep.2018.08.069⟩. ⟨hal-01887337⟩ Document type : ART
Xi Liu, Béatrice Loriod, Stefano Caffarri, Erwan Corre, Jean-Philippe Mevy. TRANS-C³ - The Transcriptome of downy oak (Quercus pubescens Willd.) in Response to Climate Change. Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille, France. ⟨hal-01857993⟩ Document type : POSTER
Nga thi thuy Nguyen, Bruno Contreras-Moreira, Jaime Castro-Mondragon, Walter Santana-Garcia, Raul Ossio, et al.. RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Research, 2018, 46 (W1), pp.W209 - W214. ⟨10.1093/nar/gky317⟩. ⟨hal-01874932⟩ Document type : ART
Ngoc Thy Nguyen, Romain R Vivès, Magali Iché-Torres, Vincent Delauzun, Els Saesen, et al.. Genetic and enzymatic characterization of 3-O-sulfotransferase SNPs associated with Plasmodium falciparum parasitaemia. Glycobiology, 2018, 28 (7), pp.534-541. ⟨10.1093/glycob/cwy038⟩. ⟨hal-02045171⟩ Document type : ART
Axel Aigle, Patricia Bonin, Nicolas Fernandez -Nunez, Béatrice B. Loriod, Sophie Guasco, et al.. The nature of electron acceptor (MnIV/NO3) triggers differential expression of genes associated with stress and ammonium limitation responses in Shewanella algae C6G3. FEMS Microbiology Letters, In press, ⟨10.1093/femsle/fny068⟩. ⟨hal-01766209⟩ Document type : ART
Salvatore Spicuglia, Lan T.M. Dao. Transcriptional regulation by promoters with enhancer function. Transcription, 2018, ⟨10.1080/21541264.2018.1486150⟩. ⟨hal-01816890⟩ Document type : ART
Dimitri Desvillechabrol, Rachel Legendre, Claire Rioualen, Christiane Bouchier, Jacques van Helden, et al.. Sequanix: a dynamic graphical interface for Snakemake workflows. Bioinformatics, 2018, 34 (11), pp.1934 - 1936. ⟨10.1093/bioinformatics/bty034⟩. ⟨hal-01874933⟩ Document type : ART
Yasmine Labiad, Geoffroy Venton, Farnault Laure, Céline Baier, Julien Colle, et al.. A transcriptomic signature predicting septic outcome in patients undergoing autologous stem cell transplantation. Experimental Hematology, 2018, ⟨10.1016/j.exphem.2018.06.001⟩. ⟨hal-01850637⟩ Document type : ART
G. Venton, P. Suchon, J. Colle, C. Baier, F. Sanderson, et al.. Hematopoietic reconstitution after autologous hematopoietic stem cell transplantation: do CD45 (+) CD34 (+) CD38 (−) progenitors really matter in real life?. Transfusion and Apheresis Science, 2018, 57 (3), pp.406-408. ⟨10.1016/j.transci.2018.04.021⟩. ⟨hal-01977309⟩ Document type : ART
Alejandra Medina-Rivera, David Santiago-Algarra, Denis Puthier, Salvatore Spicuglia. Widespread Enhancer Activity from Core Promoters. Trends in Biochemical Sciences, 2018, 43 (6), pp.452 - 468. ⟨10.1016/j.tibs.2018.03.004⟩. ⟨hal-01808594⟩ Document type : ART
Franck Thuny, Stéphane Ederhy, Marion Escudier, Nathalie Lalevee, Jennifer Cautela. Response by Thuny et al. to Letter Regarding Article, “Clinical Features, Management, and Outcomes of Immune Checkpoint Inhibitor–Related Cardiotoxicity”. 2018, pp.2423 - 2424. ⟨10.1161/CIRCULATIONAHA.118.033783⟩. ⟨hal-01843016⟩ Document type : OTHER
Martine Dubois, Cynthia Campart, Tareq Al Sagheer, Marie-Christine Tonon, Nicolas Perzo, et al.. Cancer treatments on cognition: Building translational research to optimize design of preclinical animal studies.. 11èmes journées scientifiques du Cancéropôle Nord-Ouest, Deauville, May 2018, Deauville, France. ⟨hal-02337486⟩ Document type : POSTER
Jonathan Bond, Christine Tran Quang, Guillaume Hypolite, Mohamed Belhocine, Aurélie Bergon, et al.. Novel Intergenically Spliced Chimera, NFATC3-PLA2G15 , Is Associated with Aggressive T-ALL Biology and Outcome. Molecular Cancer Research, 2018, ⟨10.1158/1541-7786.MCR-17-0442⟩. ⟨hal-01716815⟩ Document type : ART
Kaj Chokeshaiusaha, Denis Puthier, Catherine Nguyen, Thanida Sananmuang. A demonstration of the H3 trimethylation ChIP-seq analysis of galline follicular mesenchymal cells and male germ cells. Asian-Australasian journal of animal sciences, 2018, ⟨10.5713/ajas.17.0744⟩. ⟨hal-01743254⟩ Document type : ART
Diogo Ribeiro, Andreas Zanzoni, Andrea Cipriano, Riccardo Delli ponti, Lionel Spinelli, et al.. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Research, 2018, ⟨10.1093/nar/gkx1169⟩. ⟨hal-01644177⟩ Document type : ART
Robin Van der lee, Benoit Ballester, François Parcy, Aziz Khan, Oriol Fornés, et al.. Erratum. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research, 2018, 46 (D1), pp.D1284-D1284. ⟨10.1093/nar/gkx1188⟩. ⟨hal-01980416⟩ Document type : ART
Jeanne Chèneby, Marius Gheorghe, Marie Artufel, Anthony Mathelier, Benoit Ballester. ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research, 2018, 46 (D1), pp.D267-D275. ⟨10.1093/nar/gkx1092⟩. ⟨hal-01646201⟩ Document type : ART
Aziz Khan, Oriol Fornés, Arnaud Stigliani, Marius Gheorghe, Jaime A. Castro-Mondragon, et al.. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research, 2018, 46 (D1), pp.D260-D266. ⟨10.1093/nar/gkx1126⟩. ⟨hal-01646126⟩ Document type : ART
Alain Dessein, Agnès Fleury, Helia Dessein, S. Marquet. Genetics of infections and diseases caused by human parasites affecting the central nervous system.. Neuroepidemiology in Tropical Health san Diego Academic Press, 2018. ⟨hal-03890431⟩ Document type : COUV
C. Mathieu, Martine Desrois, Frank Kober, Nathalie Lalevee, Carole Lan, et al.. Sex-Mediated Response to the Beta-Blocker Landiolol in Sepsis. Critical Care Medicine, 2018, 46 (7), pp.e684-e691. ⟨10.1097/CCM.0000000000003146⟩. ⟨hal-01844468⟩ Document type : ART
Caroline Choquet, Thi Hong Minh Nguyen, Pierre Sicard, Emeline Buttigieg, Thi Thom Tran, et al.. Deletion of Nkx2-5 in trabecular myocardium reveals the developmental origins of pathological heterogeneity associated with ventricular non-compaction cardiomyopathy. PLoS Genetics, 2018, 14 (7), pp.e1007502. ⟨10.1371/journal.pgen.1007502⟩. ⟨hal-01832385⟩ Document type : ART
S. Marquet, Vasconcelos Luydson. Clinical, Epidemiological, Immunological and Molecular Characteristics of Malaria. Tropical Diseases: An overview of major diseases occuring in the Americas Edied by Milena de Paiva Cavalcanti, 2018. ⟨hal-03890446⟩ Document type : COUV