Publications 2020

Sandeep Appunni, Muni Rubens, Venkataraghavan Ramamoorthy, Hina Sharma, Anjani Kumar Singh, et al.. Differentially Expressed Genes and Their Clinical Significance in Ischaemic Stroke: An In-Silico Study. The Malaysian Journal of Medical Sciences, 2020, 27 (6), pp.53-67. ⟨10.21315/mjms2020.27.6.6⟩. ⟨hal-03141142⟩ Document type : ART
Laurie Laugier, Ludmila Rodrigues Pinto Ferreira, Frederico Moraes Ferreira, Sandrine Cabantous, Amanda Farage Frade, et al.. miRNAs may play a major role in the control of gene expression in key pathobiological processes in Chagas disease cardiomyopathy. PLoS Neglected Tropical Diseases, 2020, 14, ⟨10.1371/journal.pntd.0008889⟩. ⟨hal-03111790⟩ Document type : ART
David de Santiago Algarra. DISSECTION OF THE COORDINATED INTERFERON RESPONSE BY PROMOTER ELEMENTS WITH ENHANCER ACTIVITY. Quantitative Methods [q-bio.QM]. Aix-Marseille Université, 2020. English. ⟨NNT : 2020AIXM0430⟩. ⟨tel-04420220⟩ Document type : THESE
Jennifer Cautela, Sarah Zeriouh, Melanie Gaubert, Laurent Bonello, Marc Laine, et al.. Intensified immunosuppressive therapy in patients with immune checkpoint inhibitor-induced myocarditis. Journal for Immunotherapy of Cancer, 2020, 8 (2), pp.e001887. ⟨10.1136/jitc-2020-001887⟩. ⟨hal-03096529⟩ Document type : ART
Erwan Sallard, José Halloy, Didier Casane, Etienne Decroly, Jacques van Helden. Tracing the origins of SARS-CoV-2 in coronavirus phylogenies. Médecine/Sciences, In press, Août-Septembre 2020, 36, ⟨10.1051/medsci/2020123⟩. ⟨hal-02891455v8⟩ Document type : ART
Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornés, et al.. Insights gained from a comprehensive all- against-all transcription factor binding motif benchmarking study. Genome Biology, 2020, 21 (1), ⟨10.1186/s13059-020-01996-3⟩. ⟨hal-02773294⟩ Document type : ART
Vivien Sutera, Aurélie Hennebique, Fabrice Lopez, Nicolas Fernandez, Dominique Schneider, et al.. Genomic trajectories to fluoroquinolone resistance in Francisella tularensis subsp. holarctica live vaccine strain. International Journal of Antimicrobial Agents, 2020, 56, ⟨10.1016/j.ijantimicag.2020.106153⟩. ⟨hal-03139160⟩ Document type : ART
Hermenegildo Taboada-Castro, Jaime Abraham Castro-Mondragón, Alejandro Aguilar-Vera, Alfredo José Hernández-Álvarez, Jacques van Helden, et al.. RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach. Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.567471⟩. ⟨hal-03141125⟩ Document type : ART
Fotis Psomopoulos, Jacques van Helden, Claudine Médigue, Anastasia Chasapi, Christos Ouzounis. Ancestral state reconstruction of metabolic pathways across pangenome ensembles. Microbial Genomics, 2020, 6 (11), ⟨10.1099/mgen.0.000429⟩. ⟨hal-03089213⟩ Document type : ART
Eva Seipelt, Franck Tourniaire, Charlène Couturier, Julien Astier, Béatrice B. Loriod, et al.. Prenatal maternal vitamin D deficiency sex‐dependently programs adipose tissue metabolism and energy homeostasis in offspring. FASEB Journal, 2020, 34 (11), pp.14905-14919. ⟨10.1096/fj.201902924RR⟩. ⟨hal-03156949⟩ Document type : ART
Citlalli Mejía-Almonte, Stephen Busby, Joseph Wade, Jacques van Helden, Adam Arkin, et al.. Redefining fundamental concepts of transcription initiation in bacteria. Nature Reviews Genetics, 2020, 21 (11), pp.699-714. ⟨10.1038/s41576-020-0254-8⟩. ⟨hal-03139472⟩ Document type : ART
Thanida Sananmuang, Denis Puthier, Catherine Nguyen, Kaj Chokeshaiusaha. Novel classifier orthologs of bovine and human oocytes matured in different melatonin environments. Theriogenology, 2020, 156, pp.82-89. ⟨10.1016/j.theriogenology.2020.06.029⟩. ⟨hal-03015699⟩ Document type : ART
Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Biak Sang, Isabelle Peiffer, et al.. A predictable conserved DNA base composition signature defines human core DNA replication origins. Nature Communications, 2020, ⟨10.1038/s41467-020-18527-0⟩. ⟨hal-02945610⟩ Document type : ART
Ashutosh Kumar, Muneeb A Faiq, Vikas Pareek, Khursheed Raza, Ravi K Narayan, et al.. Relevance of SARS-CoV-2 related factors ACE2 and TMPRSS2 expressions in gastrointestinal tissue with pathogenesis of digestive symptoms, diabetes-associated mortality, and disease recurrence in COVID-19 patients. Medical Hypotheses, 2020, 144, ⟨10.1016/j.mehy.2020.110271⟩. ⟨hal-03141135⟩ Document type : ART
Ashutosh Kumar, Vikas Pareek, Muneeb A Faiq, Pavan Kumar, Chiman Kumari, et al.. Transcriptomic analysis of the signature of neurogenesis in human hippocampus suggests restricted progenitor cell progression post-childhood. IBRO Reports, 2020, 9, pp.224 - 232. ⟨10.1016/j.ibror.2020.08.003⟩. ⟨hal-03141129⟩ Document type : ART
Samia Nisar. Role of ATP2B4 and human malaria : looking for functional genetic variants associated with malaria. Life Sciences [q-bio]. Aix-Marseille Université, 2020. English. ⟨NNT : 2020AIXM0218⟩. ⟨tel-04420272⟩ Document type : THESE
Amanda Farage Frade-Barros, Barbara Maria Ianni, Sandrine Cabantous, Cristina Wide Pissetti, Bruno Saba, et al.. Corrigendum: Polymorphisms in Genes Affecting Interferon-γ Production and Th1 T Cell Differentiation Are Associated With Progression to Chagas Disease Cardiomyopathy. Frontiers in Immunology, 2020, 11, ⟨10.3389/fimmu.2020.593759⟩. ⟨hal-03141121⟩ Document type : ART
Agata Cieslak, Guillaume Charbonnier, Melania Tesio, Eve-Lyne Mathieu, Mohamed Belhocine, et al.. Blueprint of human thymopoiesis reveals molecular mechanisms of stage-specific TCR enhancer activation. Journal of Experimental Medicine, 2020, 217 (9), ⟨10.1084/jem.20192360⟩. ⟨hal-03015052⟩ Document type : ART
J.P. Mevy, Béatrice B. Loriod, Xi Liu, Erwan Corre, Magali Torres, et al.. Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics. Plants, 2020, 9 (9), pp.1149. ⟨10.3390/plants9091149⟩. ⟨hal-02945417⟩ Document type : ART
Franck Touret, Magali Gilles, Karine Barral, Antoine Nougairède, Jacques van Helden, et al.. In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication. Scientific Reports, 2020, 10 (1), pp.13093. ⟨10.1038/s41598-020-70143-6⟩. ⟨inserm-02944556⟩ Document type : ART
Muhammad Ahmad Maqbool, Léo Pioger, Amal Zine El Aabidine, Nezih Karasu, Anne Marie Molitor, et al.. Alternative Enhancer Usage and Targeted Polycomb Marking Hallmark Promoter Choice during T Cell Differentiation. Cell Reports, 2020, 32, ⟨10.1016/j.celrep.2020.108048⟩. ⟨hal-03015018⟩ Document type : ART
Pierpaolo Andriani, Christine Brun, Giuseppe Carignani, Gino Cattani. Exaptation and Beyond: Multilevel Function Evolution in Biology and Technology. Understanding Innovation Through Exaptation, Springer, Cham, pp.69-84, 2020, The Frontiers Collection, ⟨10.1007/978-3-030-45784-6_6⟩. ⟨hal-02901516⟩ Document type : COUV
Amanda Farage Frade-Barros, Barbara Maria Ianni, Sandrine Cabantous, Cristina Wide Pissetti, Bruno Saba, et al.. Polymorphisms in Genes Affecting Interferon-γ Production and Th1 T Cell Differentiation Are Associated With Progression to Chagas Disease Cardiomyopathy. Frontiers in Immunology, 2020, 1, ⟨10.3389/fimmu.2020.01386⟩. ⟨hal-02898299⟩ Document type : ART
Guoqiang Hua, Aurélie Bergon, Pierre Cauchy, Brigitte Kahn‐perlès, François Bertucci, et al.. ERBB2b mRNA isoform encodes a nuclear variant of the ERBB2 oncogene in breast cancer. Journal of Cellular Biochemistry, 2020, ⟨10.1002/jcb.29762⟩. ⟨hal-02897104⟩ Document type : ART
Sandrine Cabantous, Belco Poudiougou, Aurélie Bergon, Abdoulaye Barry, Aboubacar A Oumar, et al.. Understanding Human Cerebral Malaria through a Blood Transcriptomic Signature: Evidences for Erythrocyte Alteration, Immune/Inflammatory Dysregulation, and Brain Dysfunction. Mediators of Inflammation, 2020, 2020, pp.1-15. ⟨10.1155/2020/3280689⟩. ⟨hal-02898283⟩ Document type : ART
Darely Gutiérrez-Reyna, Alejandra Cedillo-Baños, Linda Kempis-Calanis, Oscar Ramírez-Pliego, Lisa Bargier, et al.. IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8+ T Cells. Frontiers in Immunology, 2020, 11, ⟨10.3389/fimmu.2020.01089⟩. ⟨hal-02935693⟩ Document type : ART
Diogo Ribeiro, Alexis Prod’homme, Adrien Teixeira, Andreas Zanzoni, Christine Brun. The role of 3 UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization. Nucleic Acids Research, 2020, pp.gkaa462. ⟨10.1093/nar/gkaa462⟩. ⟨hal-02773956⟩ Document type : ART
Kaj Chokeshaiusaha, Denis Puthier, Thanida Sananmuang, Em-On Olanratmanee, Catherine Nguyen, et al.. Differential DNA methylation analysis across the promoter regions using methylated DNA immunoprecipitation sequencing profiling of porcine loin muscle. Veterinary World, 2020, 13, pp.1113 - 1125. ⟨10.14202/vetworld.2020.1113-1125⟩. ⟨hal-03015708⟩ Document type : ART
Aurore Touzart, Nicolas Boissel, Mohamed Belhocine, Charlotte Smith, Carlos Graux, et al.. Low level CpG island promoter methylation predicts a poor outcome in adult T-cell acute lymphoblastic leukemia. Haematologica, 2020, pp.haematol.2019.223677. ⟨10.3324/haematol.2019.223677⟩. ⟨hal-02351125⟩ Document type : ART
Jaafar Alomairi, Anne Molitor, Nori Sadouni, Saadat Hussain, Magali Torres, et al.. Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene. PLoS ONE, 2020, 15 (5), pp.e0233191. ⟨10.1371/journal.pone.0233191⟩. ⟨hal-02773600⟩ Document type : ART
Vadim Ivanov, Laure Farnault, Cedric Mercier, Cecile Colavolpe, Geoffroy Venton, et al.. Different sensitivity of CD19-positive bone marrow and lymph node lymphoblasts may cause resistance to blinatumomab in relapsed B-cell acute lymphoblastic leukemia/lymphoma. Leukemia & lymphoma, 2020, 61 (5), pp.1230-1233. ⟨10.1080/10428194.2019.1706737⟩. ⟨hal-03159741⟩ Document type : ART
Q Ferré, G. Charbonnier, N Sadouni, F Lopez, Y Kermezli, et al.. OLOGRAM : Determining significance of total overlap length between genomic regions sets. Bioinformatics, 2020, ⟨10.1093/bioinformatics/btz810⟩. ⟨hal-02383808⟩ Document type : ART
Naghmeh Hoghoughi, Sophie Barral, Sandrine Curtet, Florent Chuffart, Guillaume Charbonnier, et al.. RNA-Guided Genomic Localization of H2A.L.2 Histone Variant. Cells, 2020, 9 (2), pp.474. ⟨10.3390/cells9020474⟩. ⟨hal-02773006⟩ Document type : ART
Annie Yim, Prasanna Koti, Adrien Bonnard, Fabio Marchiano, Milena Dürrbaum, et al.. mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. Nucleic Acids Research, 2020, ⟨10.1093/nar/gkz1128⟩. ⟨hal-02394433⟩ Document type : ART
R Arcani, P Suchon, G Venton, C Soubrier, L Gaigne, et al.. Efficacy of intravenous iron therapy in non-anaemic iron-deficient patients with fatigue. Netherlands Journal of Medicine, 2020. ⟨hal-03152526⟩ Document type : ART
Jeanne Chèneby, Zacharie Ménétrier, Martin Mestdagh, Thomas Rosnet, Allyssa Douida, et al.. ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments. Nucleic Acids Research, 2020, ⟨10.1093/nar/gkz945⟩. ⟨hal-02351736⟩ Document type : ART
Oriol Fornés, Jaime Castro-Mondragon, Aziz Khan, Robin van Der Lee, Xi Zhang, et al.. JASPAR 2020: update of the open-access database of transcription factor binding profiles.. Nucleic Acids Research, 2020, 48 (D1), pp.D87-D92. ⟨10.1093/nar/gkz1001⟩. ⟨hal-02365013⟩ Document type : ART